EY753558

Overview
NameEY753558
Unique NameEY753558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length904
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753558 vs. ExPASy Swiss-Prot
Match: VSP55_ARATH (Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana GN=At1g32410 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.002e-23
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  275 PMVLLYFLNLRICGSTQPSD---------LTGASAVGSIAIPIMLKHAGVIGWGALAMELSCFFGLVLAIMCY--IGVSEDDDYSIL 502
            PM LL+F           SD         LTGASAVGS+AIP +LKHAG+IGWGALA++LS +   ++AI+ Y  IG + D+ YS +
Sbjct:   54 PMPLLFFGGSDSTSLFNESDNSWINAAKFLTGASAVGSVAIPSILKHAGLIGWGALALDLSSYVVFLVAILGYICIGDASDNYYSYI 140          

HSP 2 Score: 62.003 bits (149), Expect = 5.002e-23
Identity = 27/43 (62.79%), Postives = 33/43 (76.74%), Query Frame = 3
Query:   87 MAYLPGYMRACLHTVKLSFLAIMVSGGIELHILACASYNTWWP 215
            MA +PGY+R CL   K++FLAI+VS GI L ILACA +N WWP
Sbjct:    1 MADVPGYLRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWP 43          
The following BLAST results are available for this feature:
BLAST of EY753558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
VSP55_ARATH5.002e-2347.13Vacuolar protein sorting-associated protein 55 hom... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-C04-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753558 ID=EY753558; Name=EY753558; organism=Citrus sinensis; type=EST; length=904bp
CAGTAGGGTTGTGTCTGACTTGTATATGTCCAAATCCTAAACCCAAATTG
ACCTGCCCCCTTGTATGCTGCAAGGCTAGGGGGGTGATGGCATACTTACC
GGGTTATATGCGTGCTTGCCTGCACACTGTGAAACTATCTTTCTTAGCAA
TCATGGTTTCTGGAGGAATAGAACTGCATATTCTGGCGTGCGCGTCGTAC
AATACTTGGTGGCCACTGCTCACTGTACTAATGTATGTACTTACTACCCT
TGCCTCTGCTGTTTTTTGCCGGGTCCAATGGTTCTTCTTTATTTTCTGAA
TCTGAGAATATGTGGTTCAACGCAACCAAGTGACTTGACTGGAGCTTCTG
CGGTTGGAAGCATTGCAATACCTATTATGTTAAAGCATGCAGGGGTTATT
GGATGGGGAGCACTGGCAATGGAGCTATCATGTTTTTTCGGTCTTGTACT
GGCCATAATGTGTTATATTGGCGTGAGTGAGGATGATGATTACAGTATAC
TCTGACATACTGGTGACTTTGGTGCTCAAGTCATTACTGCACAAAATTGG
CGATGTTGGTTACAATTATCTGATGGCTTTTCTTTTTACATTTGGGAACC
TTACATCCTTTTTTTTTTGTTTTCCAAAGGGATAATAATTGGCCTTTAAT
GGAAGAAAATTCTTTGGCCTCGAAACGCCTTCCCCAACGGTTGCCCAACA
GAAGATAGAAAAAAAAAGGGGGCCCGGTTTTAAGAGATATAAGCTTACGG
CCGCGGGGGTGCCACCGTAAAAGTCTTTCTTAAGTGGACCCTAAATTAAA
TACCGGGCCCTGGTTTTTTAACCGTGGGTCTGGGAAAAACCGGGGGTGTC
CACCTTTATTCCTTTAAAGAAATGCCTCTTTGCGGATTGGAATTAAAAAA
AAAA
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