EY753556

Overview
NameEY753556
Unique NameEY753556
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753556_ssr538 microsatellite EY753556_ssr538:538..549. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RHO1_PEA (Rac-like GTP-binding protein RHO1 OS=Pisum sativum GN=RHO1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.934e-23
Identity = 52/63 (82.54%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:  220 MSASRFIKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            MSASRFIKCVTV DGAVGKTC+L SY SNTFPTDYVPTVFDN SANVVV GS VN  +WDT G
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG 63
[Close]
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.138e-23
Identity = 52/63 (82.54%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:  220 MSASRFIKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            MSASRFIKCVTV DGAVGKTC+L SY SNTFPTDYVPTVFDN SANVVV GS VN  +WDT G
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
[Close]
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.138e-23
Identity = 52/63 (82.54%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:  220 MSASRFIKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            MSASRFIKCVTV DGAVGKTC+L SY SNTFPTDYVPTVFDN SANVVV GS VN  +WDT G
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAG 63
[Close]
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RAC11_ARATH (Rac-like GTP-binding protein ARAC11 OS=Arabidopsis thaliana GN=ARAC11 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.138e-23
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:  220 MSASRFIKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            MSASRF+KCVTV DGAVGKTC+L SY SNTFPTDYVPTVFDN SANVVV GS VN  +WDT G
Sbjct:    1 MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAG 63
[Close]
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RAC6_ARATH (Rac-like GTP-binding protein ARAC6 OS=Arabidopsis thaliana GN=ARAC6 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 8.764e-23
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:  220 MSASRFIKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            MSASRFIKCVTV DGAVGKTC+L SY SNTFPTDYVPTVFDN SANVVV G+ VN  +WDT G
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAG 63
[Close]
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RAC1_BETVU (Rac-like GTP-binding protein RHO1 OS=Beta vulgaris GN=RHO1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.764e-23
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:  220 MSASRFIKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            MSASRFIKCVTV DGAVGKTC+L SY SNTFPTDYVPTVFDN SANVVV G+ VN  +WDT G
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAG 63
[Close]
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.764e-23
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:  220 MSASRFIKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            MSASRFIKCVTV DGAVGKTC+L SY SNTFPTDYVPTVFDN SANVVV G+ VN  +WDT G
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAG 63
[Close]
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.145e-22
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:  220 MSASRFIKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            MSASRFIKCVTV DGAVGKTC+L SY SNTFPTDYVPTVFDN SANVVV G+ VN  +WDT G
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAG 63
[Close]
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.145e-22
Identity = 51/63 (80.95%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:  220 MSASRFIKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            MSASRFIKCVTV DGAVGKTC+L SY SNTFPTDYVPTVFDN SANVVV G+ VN  +WDT G
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAG 63
[Close]
BLAST of EY753556 vs. ExPASy Swiss-Prot
Match: RAC3_ARATH (Rac-like GTP-binding protein ARAC3 OS=Arabidopsis thaliana GN=ARAC3 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.952e-22
Identity = 49/63 (77.78%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:  220 MSASRFIKCVTVCDGAVGKTCVLTSYASNTFPTDYVPTVFDNLSANVVVGGSPVNSWVWDTVG 408
            MSASRFIKCVTV DGAVGKTC+L SY SNTFPTDYVPTVFDN SANV+V G+ +N  +WDT G
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWDTAG 63
The following BLAST results are available for this feature:
BLAST of EY753556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RHO1_PEA3.934e-2382.54Rac-like GTP-binding protein RHO1 OS=Pisum sativum... [more]
RAC5_ORYSJ5.138e-2382.54Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RAC1_LOTJA5.138e-2382.54Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RAC11_ARATH5.138e-2380.95Rac-like GTP-binding protein ARAC11 OS=Arabidopsis... [more]
RAC6_ARATH8.764e-2380.95Rac-like GTP-binding protein ARAC6 OS=Arabidopsis ... [more]
RAC1_BETVU8.764e-2380.95Rac-like GTP-binding protein RHO1 OS=Beta vulgaris... [more]
RAC1_ARATH8.764e-2380.95Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ... [more]
RAC6_ORYSJ1.145e-2280.95Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]
RAC5_ARATH1.145e-2280.95Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]
RAC3_ARATH1.952e-2277.78Rac-like GTP-binding protein ARAC3 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-C02-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753556 ID=EY753556; Name=EY753556; organism=Citrus sinensis; type=EST; length=778bp
CTGTCTCTTTGCAGATTAGGGTTTAATTACCTTCGCTACCTTAATTCAAG
ACTTCTTTTCACTCAATTCCTAAGCTCCCGTTGACGAACTGAGTTGTTCT
CTTTTGGTCTTCGAAATGAGTGAAGTCTGAGGCAAGAAGTGTACGTAAAG
AACCTGAGCAGTCTTCCAAGGGCATTGTCGGAATAAGCTGGGGAAGAGAA
TAGAGATCTGGTGGCGCAAATGAGCGCGTCGAGGTTCATAAAGTGCGTCA
CTGTCTGTGACGGCGCCGTCGGAAAAACTTGCGTGCTTACTTCTTACGCC
AGCAACACTTTCCCAACGGACTATGTGCCAACTGTCTTTGACAATTTGAG
TGCGAATGTGGTTGTTGGTGGGAGTCCGGTCAACTCGTGGGTTTGGGACA
CTGTTGGTTTGTGAGATTCCCAGTGGTGGAGATCGNGGGTTTTTGTGGTA
GTTTTGCGGGTTACTTGGTTCGTGCTGCTTTCTCGGGCGTGTTGCGATTG
TTCTGGAGATTGTGTGCTTGGCGGCGTGCTTCGGGCCGCGGCGGCGGCGT
TTTTGGGCGGCGGGCGTGCATTTTTGTTTCCGTCTGTCGATATTGTTTTC
TGTGTGGCGCTCTGCCCCCCCCTCCCCTCCTTTCTCCGCCGGGGCGACGT
CATGTCCTGCCCCCCCCTCCTTCGCTCCGCCCGCCGCGCTCCCCGTGCTC
GNCGCNTTTCTGTACTTCCGTCCTCTCCCTCGGGAATTATTTAACTCCCT
TCTCTTTTTTCTTCCCTGTCTCGCCGCT
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