EY753546

Overview
NameEY753546
Unique NameEY753546
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3221 contig Csv1_Contig3221:14..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY753546 vs. ExPASy Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 2.118e-53
Identity = 106/146 (72.60%), Postives = 115/146 (78.77%), Query Frame = 2 
Query:   92 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQSVD 529
            MKYNPRV+SSRRKNRKAHFTA SS RR++MS+PLSTDLRQKYNVRSMP+RKDDEVQ+VRGTYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKVVIT                           TKFT ED+MQ+VD
Sbjct:    1 MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGRAAADKEKGTKFTSEDVMQNVD 146
[Close]
BLAST of EY753546 vs. ExPASy Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.533e-51
Identity = 101/146 (69.18%), Postives = 114/146 (78.08%), Query Frame = 2 
Query:   92 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQSVD 529
            MK+NPRVSSSRRKNRKAHFTAPSSVRR+LMS+PLS DLR K+NVRSMP+RKDDEVQVVRGT+KGREGKV+QVYRRKWVIHIERITREKVNGSTVNVG+N S V+IT                           TKF+ ED+M++VD
Sbjct:    1 MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRGTFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGRAAADKEKGTKFSAEDVMENVD 146
[Close]
BLAST of EY753546 vs. ExPASy Swiss-Prot
Match: RL26_BRARA (60S ribosomal protein L26 OS=Brassica rapa GN=RPL26 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.053e-47
Identity = 95/145 (65.52%), Postives = 108/145 (74.48%), Query Frame = 2 
Query:   92 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQSV 526
            MKYNPRV+SSRR+NRK HFTA SS RR+ MS+PLSTDLRQKYNVRSMP+RKDDE Q+VRGTYKGREGK+ QVYRRK VIHIER+TREKVNG+TVNVG+ P+KVVIT                           TKFT  D+MQ+V
Sbjct:    1 MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRGTYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLERKAKGRAAADKDKGTKFTAVDVMQNV 145
[Close]
BLAST of EY753546 vs. ExPASy Swiss-Prot
Match: RL26L_HUMAN (60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.615e-39
Identity = 80/107 (74.77%), Postives = 95/107 (88.79%), Query Frame = 2 
Query:   92 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 409
            MK+NP V+S R KNRK HF APS VRR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHVRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of EY753546 vs. ExPASy Swiss-Prot
Match: RL26_MOUSE (60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.639e-39
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = 2 
Query:   92 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 409
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of EY753546 vs. ExPASy Swiss-Prot
Match: RL26_MACFA (60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.639e-39
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = 2 
Query:   92 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 409
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of EY753546 vs. ExPASy Swiss-Prot
Match: RL26_HUMAN (60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.639e-39
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = 2 
Query:   92 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 409
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of EY753546 vs. ExPASy Swiss-Prot
Match: RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.639e-39
Identity = 79/107 (73.83%), Postives = 95/107 (88.79%), Query Frame = 2 
Query:   92 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 409
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
[Close]
BLAST of EY753546 vs. ExPASy Swiss-Prot
Match: RL26_RAT (60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.128e-38
Identity = 79/107 (73.83%), Postives = 94/107 (87.85%), Query Frame = 2 
Query:   92 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 409
            MK+NP V+S R KNRK HF APS +RR +MS+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI PSKVVIT
Sbjct:    1 MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVIT 107
[Close]
BLAST of EY753546 vs. ExPASy Swiss-Prot
Match: RL26_AILME (60S ribosomal protein L26 OS=Ailuropoda melanoleuca GN=RPL26 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.379e-36
Identity = 77/107 (71.96%), Postives = 92/107 (85.98%), Query Frame = 2 
Query:   92 MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSTDLRQKYNVRSMPVRKDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 409
            MK  P V+S R KNRK HF APS +RR  +S+PLS +LRQKYNVRSMP+RKDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:    1 MKSYPFVTSDRSKNRKRHFNAPSHIRRKTLSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107
The following BLAST results are available for this feature:
BLAST of EY753546 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL261_ARATH2.118e-5372.6060S ribosomal protein L26-1 OS=Arabidopsis thalian... [more]
RL262_ARATH7.533e-5169.1860S ribosomal protein L26-2 OS=Arabidopsis thalian... [more]
RL26_BRARA5.053e-4765.5260S ribosomal protein L26 OS=Brassica rapa GN=RPL2... [more]
RL26L_HUMAN6.615e-3974.7760S ribosomal protein L26-like 1 OS=Homo sapiens G... [more]
RL26_MOUSE8.639e-3973.8360S ribosomal protein L26 OS=Mus musculus GN=Rpl26... [more]
RL26_MACFA8.639e-3973.8360S ribosomal protein L26 OS=Macaca fascicularis G... [more]
RL26_HUMAN8.639e-3973.8360S ribosomal protein L26 OS=Homo sapiens GN=RPL26... [more]
RL26_BOVIN8.639e-3973.8360S ribosomal protein L26 OS=Bos taurus GN=RPL26 P... [more]
RL26_RAT1.128e-3873.8360S ribosomal protein L26 OS=Rattus norvegicus GN=... [more]
RL26_AILME1.379e-3671.9660S ribosomal protein L26 OS=Ailuropoda melanoleuc... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-B04-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753546 ID=EY753546; Name=EY753546; organism=Citrus sinensis; type=EST; length=769bp
GGTGCTGGTGCCGGNATTCCAGGGCTGACCCACGCGTCCGCCTCTAGCTT
CCGCTGTTGTAAAACCCTAGGCCCAGCCCTCCACATCCACCATGAAGTAC
AACCCCAGGGTGTCATCCTCTCGCCGTAAGAACCGGAAGGCGCACTTCAC
CGCCCCTTCCAGCGTGCGCCGCATCTTGATGAGCGCGCCGCTGTCCACAG
ACCTCCGTCAGAAGTACAACGTAAGGTCGATGCCTGTGCGCAAGGACGAC
GAGGTTCAGGTTGTGCGTGGGACCTACAAGGGGCGCGAGGGCAAAGTCGT
TCAAGTGTATCGCCGGAAGTGGGTCATTCACATCGAGCGCATCACTCGCG
AGAAGGTTAATGGATCCACTGTGAATGTGGGAATCAACCCATCAAAGGTC
GTGATCACCAAGCTCCGTCTGGACAAGGACAGGAAGTCTTTGCTCGATCG
CAAGGCCAAGGGACGTGCCGCCGCCGACAAGGAGAAGGGTACCAAGTTCA
CCCCAGAGGATATTATGCAGAGCGTTGACTAATTTTGATAAGAGGTTGTT
TTTAAAGTTTTTGTTTAATCATAGAATTTATGGATTTAGGATGTTTTGTT
TTGGCAATGTCACTAAGATATTTCTATTGTTATTGGGTTATGTCATGAGG
ATCCGATTATGGGCTTATGTTGGAGATTTAAGATACTTCTTTGGATTTTC
TCCTCGTCGTTTCATTTTTAATTCTATTTTTTNNNAANNAAAANNNANNA
AAAAAAAAAAAAAAAAAAG
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