EY753543 | Citrus Genome Database

Overview


Name	EY753543
Unique Name	EY753543
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	868

Libraries


Library Name	Type
Sweet orange leaf, field plant A	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY753543 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 1.155e-73
Identity = 128/170 (75.29%), Postives = 145/170 (85.29%), Query Frame = 3

Query:   51 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIGLNDVVRWVTFHSGMILVICLKL*PCR 560
            D I IREVW+ NL EEFALIREIVDK++YIAMDTEFPGVVL+PV  FK  ND NY+TLK+NVD+LKLIQ+GLTFSDENGNLPTCGTDKFCIWQFNFREFN+ +DI+AS+S+ELL QCGIDFKKN EKGIDV RFGEL+MSSGI LND + WVTFH G      +KL  C+
Sbjct:    8 DSIMIREVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKPVATFKYNNDLNYRTLKENVDLLKLIQVGLTFSDENGNLPTCGTDKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVKLLTCK 177

HSP 2 Score: 31.5722 bits (70), Expect = 1.155e-73
Identity = 19/58 (32.76%), Postives = 29/58 (50.00%), Query Frame = 1

Query:  601 MYFPVVLKSNLWMKFCNNPLVWVTKPAGLLEGDPIGYCYPPGSNSSVLPPHLGTSRNL 774
            +YFP V      M FCN     + + A L+  + +G C+  GS+S +    LG+ R L
Sbjct:  192 VYFPTVYDIKHLMTFCNGLFGGLNRLAELMGVERVGICHQAGSDSLLT---LGSFRKL 246

[Close]

BLAST of EY753543 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 2.786e-69
Identity = 119/176 (67.61%), Postives = 139/176 (78.98%), Query Frame = 3

Query:   51 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIGLNDVVRWVTFHSGMILVICLKL*PCRS*RDPQ 578
            D IQIREVWNDNL+EE  LIR++VD + Y+AMDTEFPG+V+RPVG FK+  DY+Y+TLK NV++LK+IQLGLTFS+E GNLPTCGTDK+CIWQFNFREF+L  DIFA DS+ELL Q GID  KN   GID  RF ELLMSSGI LN+ V WVTFHSG      LKL  C++  D Q
Sbjct:    8 DSIQIREVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADYHYETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPDSQ 183

HSP 2 Score: 39.6614 bits (91), Expect = 2.786e-69
Identity = 21/48 (43.75%), Postives = 28/48 (58.33%), Query Frame = 1

Query:  592 LDNMYFPVVLKSNLWMKFCNNPLVWVTKPAGLLEGDPIGYCYPPGSNS 735
            L N+YFP V      MKFCN+    + K A LLE + +G C+  GS+S
Sbjct:  189 LINVYFPTVYDIKHLMKFCNSLHGGLNKLAELLEVERVGICHQAGSDS 236

[Close]

BLAST of EY753543 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 248.44 bits (633), Expect = 4.737e-69
Identity = 122/179 (68.16%), Postives = 142/179 (79.33%), Query Frame = 3

Query:   51 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTD-KFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIGLNDVVRWVTFHSGMILVICLKL*PCRS*RDPQLG 584
            D IQIREVWNDNLE E ALIRE+VD + ++AMDTEFPG+V RPVG FK   +Y+Y+TLK NV++LK+IQLGLTFSDE GNLPTCGTD K+CIWQFNFREF+L  DI+A+DS+ELL Q GIDF KNNE GID  RF ELLMSSGI LN+ V WVTFHSG      LKL  C++  + Q G
Sbjct:    8 DSIQIREVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEYHYETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLLTCQNLPETQTG 186

HSP 2 Score: 35.039 bits (79), Expect = 4.737e-69
Identity = 18/46 (39.13%), Postives = 27/46 (58.70%), Query Frame = 1

Query:  598 NMYFPVVLKSNLWMKFCNNPLVWVTKPAGLLEGDPIGYCYPPGSNS 735
            ++YFP V      MKFCN+    + K A LL+ + +G C+  GS+S
Sbjct:  192 SVYFPRVYDIKHLMKFCNSLHGGLNKLAELLDVERVGICHQAGSDS 237

[Close]

BLAST of EY753543 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 3.684e-58
Identity = 108/172 (62.79%), Postives = 127/172 (73.84%), Query Frame = 3

Query:   51 DEIQIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNIN------DYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIGLNDVVRWVTFHSGMILVICLKL 548
            D I+IREVWN NLE+E ALI + +D + Y+AMDTEFPG+V + V A  N N      +YNY TLK NV+MLKLIQLGLT SDE GNLPTCGT+K CIWQFNFREFN+I D+FA DS+ELL +  ID +KNNE G+D  RF ELLM SG+ LND + WVTFH G      LKL
Sbjct:   12 DTIEIREVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYNYDTLKANVNMLKLIQLGLTLSDEKGNLPTCGTNKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGYLLKL 183

HSP 2 Score: 26.9498 bits (58), Expect = 3.684e-58
Identity = 16/44 (36.36%), Postives = 21/44 (47.73%), Query Frame = 1

Query:  604 YFPVVLKSNLWMKFCNNPLVWVTKPAGLLEGDPIGYCYPPGSNS 735
            +FPVV      M FC N    + K A LL    +G  +  GS+S
Sbjct:  203 FFPVVYDIKYLMGFCTNLYGGLEKIAELLGVKRVGISHQAGSDS 246

HSP 3 Score: 21.1718 bits (43), Expect = 3.684e-58
Identity = 10/23 (43.48%), Postives = 14/23 (60.87%), Query Frame = 2

Query:  524 DFGYLP*VVTLPELTRSPAGFFD 592
            DFGYL  +++  EL    + FFD
Sbjct:  176 DFGYLLKLLSGKELPEEISDFFD 198

[Close]

BLAST of EY753543 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.572e-44
Identity = 87/154 (56.49%), Postives = 114/154 (74.03%), Query Frame = 3

Query:   60 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIGLNDVVRWVTFHSG 521
            +I EVW  NL+EE   IR+++ KYNY+AMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ FNL +D++A DS+ELL   GI FKK+ E+GI+   F ELLM+SG+ L + V+W++FHSG
Sbjct:   11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSG 159

HSP 2 Score: 25.409 bits (54), Expect = 3.572e-44
Identity = 15/45 (33.33%), Postives = 23/45 (51.11%), Query Frame = 1

Query:  601 MYFPVVLKSNLWMKFCNNPLVWVTKPAGLLEGDPIGYCYPPGSNS 735
            ++FPV+      MK C N    + + A  LE + IG  +  GS+S
Sbjct:  187 LFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDS 231

[Close]

BLAST of EY753543 vs. ExPASy Swiss-Prot
Match: CNOT7_HUMAN (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 3.572e-44
Identity = 87/154 (56.49%), Postives = 114/154 (74.03%), Query Frame = 3

Query:   60 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIGLNDVVRWVTFHSG 521
            +I EVW  NL+EE   IR+++ KYNY+AMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ FNL +D++A DS+ELL   GI FKK+ E+GI+   F ELLM+SG+ L + V+W++FHSG
Sbjct:   11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSG 159

HSP 2 Score: 25.409 bits (54), Expect = 3.572e-44
Identity = 15/45 (33.33%), Postives = 23/45 (51.11%), Query Frame = 1

Query:  601 MYFPVVLKSNLWMKFCNNPLVWVTKPAGLLEGDPIGYCYPPGSNS 735
            ++FPV+      MK C N    + + A  LE + IG  +  GS+S
Sbjct:  187 LFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDS 231

[Close]

BLAST of EY753543 vs. ExPASy Swiss-Prot
Match: CNOT7_CHICK (CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.572e-44
Identity = 87/154 (56.49%), Postives = 114/154 (74.03%), Query Frame = 3

Query:   60 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIGLNDVVRWVTFHSG 521
            +I EVW  NL+EE   IR+++ KYNY+AMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ FNL +D++A DS+ELL   GI FKK+ E+GI+   F ELLM+SG+ L + V+W++FHSG
Sbjct:   11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSG 159

HSP 2 Score: 25.409 bits (54), Expect = 3.572e-44
Identity = 15/45 (33.33%), Postives = 23/45 (51.11%), Query Frame = 1

Query:  601 MYFPVVLKSNLWMKFCNNPLVWVTKPAGLLEGDPIGYCYPPGSNS 735
            ++FPV+      MK C N    + + A  LE + IG  +  GS+S
Sbjct:  187 LFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDS 231

[Close]

BLAST of EY753543 vs. ExPASy Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.572e-44
Identity = 87/154 (56.49%), Postives = 114/154 (74.03%), Query Frame = 3

Query:   60 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIGLNDVVRWVTFHSG 521
            +I EVW  NL+EE   IR+++ KYNY+AMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ FNL +D++A DS+ELL   GI FKK+ E+GI+   F ELLM+SG+ L + V+W++FHSG
Sbjct:   11 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSG 159

HSP 2 Score: 25.409 bits (54), Expect = 3.572e-44
Identity = 15/45 (33.33%), Postives = 23/45 (51.11%), Query Frame = 1

Query:  601 MYFPVVLKSNLWMKFCNNPLVWVTKPAGLLEGDPIGYCYPPGSNS 735
            ++FPV+      MK C N    + + A  LE + IG  +  GS+S
Sbjct:  187 LFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDS 231

[Close]

BLAST of EY753543 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.071e-43
Identity = 86/161 (53.42%), Postives = 115/161 (71.43%), Query Frame = 3

Query:   63 IREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIGLNDVVRWVTFHSGMILVICLK 545
            IR+VW+ NL++E  LI  ++++Y  ++MDTEFPGVV RP+G FK+ +DY+YQTL+ NVD LK+IQ+GL  SDE GN P     + C WQFNF  FNL DD++A +S+ELL + GIDFKK+ E GI+   F ELL+ SG+ L + V W+TFHSG      LK
Sbjct:   22 IRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLRANVDSLKIIQIGLALSDEEGNAPV----EACTWQFNF-TFNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLK 177

[Close]

BLAST of EY753543 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.342e-43
Identity = 88/154 (57.14%), Postives = 113/154 (73.38%), Query Frame = 3

Query:   60 QIREVWNDNLEEEFALIREIVDKYNYIAMDTEFPGVVLRPVGAFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDKFCIWQFNFREFNLIDDIFASDSVELLHQCGIDFKKNNEKGIDVNRFGELLMSSGIGLNDVVRWVTFHSG 521
            +I EVW  NLEEE   IR++  K+NYIAMDTEFPGVV RP+G F++  DY YQ L+ NVD+LK+IQLGLTF +E G  P  GT     WQFNF+ FNL +D++A DS+ELL   GI FKK+ E+GI+   F ELLM+SG+ L + V+W++FHSG
Sbjct:   11 RICEVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP-GTS---TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSG 159

HSP 2 Score: 25.0238 bits (53), Expect = 1.342e-43
Identity = 14/45 (31.11%), Postives = 23/45 (51.11%), Query Frame = 1

Query:  601 MYFPVVLKSNLWMKFCNNPLVWVTKPAGLLEGDPIGYCYPPGSNS 735
            ++FP++      MK C N    + + A  LE + IG  +  GS+S
Sbjct:  187 LFFPIIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDS 231

The following BLAST results are available for this feature:

BLAST of EY753543 vs. ExPASy Swiss-Prot

BLAST of EY753543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21


Match Name	E-value	Identity	Description
CAF1J_ARATH	1.155e-73	75.29	Probable CCR4-associated factor 1 homolog 10 OS=Ar...	[more]
CAF1F_ARATH	2.786e-69	67.61	Probable CCR4-associated factor 1 homolog 6 OS=Ara...	[more]
CAF1G_ARATH	4.737e-69	68.16	Probable CCR4-associated factor 1 homolog 7 OS=Ara...	[more]
CAF1B_ARATH	3.684e-58	62.79	Probable CCR4-associated factor 1 homolog 2 OS=Ara...	[more]
CNOT7_MOUSE	3.572e-44	56.49	CCR4-NOT transcription complex subunit 7 OS=Mus mu...	[more]
CNOT7_HUMAN	3.572e-44	56.49	CCR4-NOT transcription complex subunit 7 OS=Homo s...	[more]
CNOT7_CHICK	3.572e-44	56.49	CCR4-NOT transcription complex subunit 7 OS=Gallus...	[more]
CNOT7_BOVIN	3.572e-44	56.49	CCR4-NOT transcription complex subunit 7 OS=Bos ta...	[more]
CAF1_SCHPO	1.071e-43	53.42	Poly(A) ribonuclease pop2 OS=Schizosaccharomyces p...	[more]
CNOT7_DANRE	1.342e-43	57.14	CCR4-NOT transcription complex subunit 7 OS=Danio ...	[more]

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Properties


Property Name	Value
Genbank description	CS12-C1-001-004-B01-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY753543 ID=EY753543; Name=EY753543; organism=Citrus sinensis; type=EST; length=868bp
TAGGTTTAAAATTTGCTGTCTTGGAAATGTCGGCTTTGCCTAAGGGGGGC
GATGAAATTCAAATTCGAGAGGTGTGGAATGATAATCTCGAAGAGGAATT
TGCTTTAATTCGTGAAATTGTTGATAAGTATAACTATATAGCCATGGATA
CGGAGTTCCCAGGCGTGGTTTTGCGTCCCGTGGGAGCTTTTAAGAATATT
AATGATTATAACTACCAAACGTTGAAGGATAACGTCGACATGTTGAAGTT
GATTCAATTGGGTTTAACATTTTCGGATGAAAATGGGAATTTGCCTACTT
GTGGGACTGACAAGTTTTGCATTTGGCAATTCAACTTTCGCGAGTTTAAT
TTAATTGATGATATTTTTGCTAGTGATTCAGTTGAGTTGCTGCATCAGTG
TGGGATTGATTTTAAGAAGAATAATGAGAAGGGTATTGATGTGAACCGCT
TTGGTGAGCTTTTGATGTCGTCGGGGATTGGGCTGAATGATGTTGTTCGT
TGGGTCACGTTTCACAGTGGGATGATTTTGGTTATTTGCCTTAAGTTGTG
ACCTTGCCGGAGTTAACGCGATCCCCAGCTGGGTTCTTTGATTGGACAAT
ATGTATTTTCCTGTCGTTTTGAAATCGAACCTTTGGATGAAGTTTTGCAA
CAACCCTCTTGTGTGGGTCACCAAGCCTGCGGGTTTGTTGGAGGGAGACC
CAATTGGGTATTGTTATCCCCCCGGCTCAAATTCTTCCGTACTTCCTCCC
CATTTAGGAACTTCGCGAAACCTTTTTAACTGTTGCCACAAATATCTGCT
GGTCTCTTTTGGTTTCCGTGCTCAATTCACCGCTCTCTCACCACAATACT
GCGAAAAGGAAACGAAAA