EY753528

Overview
NameEY753528
Unique NameEY753528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753528_ssr373 microsatellite EY753528_ssr373:373..392. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY753528 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.055e-52
Identity = 68/87 (78.16%), Postives = 77/87 (88.51%), Query Frame = 1
Query:  409 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 669
            R+ ELPPVDMFVTTAD   EPP+I VNTVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKFAK+WVPFCKKYNV++RAPF YF
Sbjct:   88 RVHELPPVDMFVTTADPVREPPLIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVRVRAPFMYF 174          

HSP 2 Score: 78.9518 bits (193), Expect = 1.055e-52
Identity = 36/88 (40.91%), Postives = 47/88 (53.41%), Query Frame = 2
Query:   35 MANTKSSCLPLYEKVFHKNTYHRAXXXXXXXXXXXXXXXXXXXXKNHGFAWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 298
            MA + S   PL E++ HK+ + RA                          W +AFLCE+CFTF+W+LI N KW+P  YKTYP+RL ER
Sbjct:    1 MAESSSPLPPLCERISHKSYFLRAVDLTILGLLLSLLLYRILHVNQKDTVWIVAFLCETCFTFVWLLITNIKWSPADYKTYPERLDER 88          
BLAST of EY753528 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 7.961e-50
Identity = 64/87 (73.56%), Postives = 76/87 (87.36%), Query Frame = 1
Query:  409 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 669
            R+ +LP VDMFVTTAD   EPPI+  NT+LSLLAV+YP +KLACYVSDD CSPL ++SL EASKFAK+WVPFCKKYN+++RAPFRYF
Sbjct:   88 RVHDLPSVDMFVTTADPVREPPILVANTLLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNIKVRAPFRYF 174          

HSP 2 Score: 74.3294 bits (181), Expect = 7.961e-50
Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = 2
Query:   35 MANTKSSCLPLYEKVFHKNTYHRAXXXXXXXXXXXXXXXXXXXXKNHGFAWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 298
            MA++ SS  PL EK+ +KN + R                       +   W +AFLCES F+FIW+LI + KW+P +YK+YP+RL ER
Sbjct:    1 MADSSSSLPPLCEKISYKNYFLRVVDLTILGFLFSLLLYRILLMNQNNSVWVVAFLCESFFSFIWLLITSIKWSPASYKSYPERLDER 88          
BLAST of EY753528 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 2.494e-48
Identity = 90/186 (48.39%), Postives = 106/186 (56.99%), Query Frame = 1
Query:  409 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMREN------------------------DCFLHTE-R*ISNIVKVYXRQRG----LSERSHLVTI-REKRPS--SHTTTG 870
            R+ +LP VDMFV TAD   EPPII VNTVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKF K+W PFCKKYNV++RAPFRYF              +DWK M+                          + F +T+    S IVKV    +G      E  HLV I REKRP+   H  TG
Sbjct:   88 RVHDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYF-LNPLVATDDSVFSKDWKMMKREYVKLCRKVEDATGDSHWLDADDDFEAFSNTKPNDHSTIVKVVWENKGGVGDEKEVPHLVYISREKRPNYLHHYKTG 272          

HSP 2 Score: 67.781 bits (164), Expect = 2.494e-48
Identity = 33/88 (37.50%), Postives = 45/88 (51.14%), Query Frame = 2
Query:   35 MANTKSSCLPLYEKVFHKNTYHRAXXXXXXXXXXXXXXXXXXXXKNHGFAWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 298
            MA++ SS LPL E++ HK+   R                       +   W +AFLCESCF+F+W++I   KW+P   K YP RL ER
Sbjct:    1 MADSSSSLLPLCERISHKSYILRIVDLTILVLLFSLLWYRILHMCENNTIWLVAFLCESCFSFMWLIITCIKWSPAEDKPYPNRLDER 88          
BLAST of EY753528 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 5.522e-48
Identity = 65/87 (74.71%), Postives = 76/87 (87.36%), Query Frame = 1
Query:  409 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 669
            R+ +LP VDMFV TAD   EPPI+ VNTVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKFAK+WVPFCKKYN+++RAPFRYF
Sbjct:   88 RVYDLPSVDMFVPTADPVREPPIMVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNLKVRAPFRYF 174          

HSP 2 Score: 69.3218 bits (168), Expect = 5.522e-48
Identity = 33/88 (37.50%), Postives = 44/88 (50.00%), Query Frame = 2
Query:   35 MANTKSSCLPLYEKVFHKNTYHRAXXXXXXXXXXXXXXXXXXXXKNHGFAWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 298
            MA++  S  PLYE + +K+   RA                      +G  W +AFLCESCF+F+W+L    KW+P   K YP RL ER
Sbjct:    1 MADSSCSLPPLYENISYKSYILRAVDLTILGLLFSLLLHRILYMSQNGIIWLVAFLCESCFSFVWLLSTCTKWSPAETKPYPDRLDER 88          
BLAST of EY753528 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.347e-43
Identity = 65/108 (60.19%), Postives = 79/108 (73.15%), Query Frame = 1
Query:  409 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMR 732
            R+ +LP VDMFV TAD   EPPI+ V+TVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKFAK+WVPFCKKYN ++RAP RYF              +DW+  +
Sbjct:   88 RVHDLPSVDMFVPTADPVREPPIMVVDTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNTRVRAPSRYFLKPISVATEDYEFNRDWEKTK 195          

HSP 2 Score: 55.0694 bits (131), Expect = 6.347e-43
Identity = 28/88 (31.82%), Postives = 40/88 (45.45%), Query Frame = 2
Query:   35 MANTKSSCLPLYEKVFHKNTYHRAXXXXXXXXXXXXXXXXXXXXKNHGFAWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 298
            MA++  S  PL E++ + N + RA                      +   W +AF CESCF  + +LI   KW+P   K +P RL ER
Sbjct:    1 MADSSFSLPPLCERISYTNYFLRAVYLTVLGLFFSLLLHRIRHTSEYDNVWLVAFFCESCFFLVCLLITCLKWSPADTKPFPDRLDER 88          
BLAST of EY753528 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.742e-40
Identity = 66/110 (60.00%), Postives = 79/110 (71.82%), Query Frame = 1
Query:  409 RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPV--HKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMR 732
            RI ELP VDMFVTTAD  LEPP++TVNTVLSLLA+DYP    KLACYVSDD CSPL  Y+L EA++FA+ WVPFC+++ V +RAPFRYF              +DW  M+
Sbjct:   87 RIDELPAVDMFVTTADPVLEPPLVTVNTVLSLLALDYPAAGEKLACYVSDDGCSPLTCYALREAARFARTWVPFCRRHGVAVRAPFRYFSSTPEFGPADGKFLEDWTFMK 196          

HSP 2 Score: 48.521 bits (114), Expect = 4.742e-40
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 2
Query:  194 AFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 298
            A  CE+ FTF+W+L VN KW+P+ + T+P+ L ER
Sbjct:   53 ALACEAWFTFMWLLNVNAKWSPVRFDTFPENLAER 87          
BLAST of EY753528 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.737e-34
Identity = 95/221 (42.99%), Postives = 118/221 (53.39%), Query Frame = 1
Query:  316 LALIISASFAIVFVILQVXXXXXXXXCVRLN----RIQELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYFXXXXXXXXXXXXXXQDWKNMREN------------------------DCFLHTE-R*ISNIVKVYXRQRG----LSERSHLVTI-REKRPS--SHTTTG 870
            LA    + F++V++I              +N    R+ +LP +DMFV TAD   E PIITVNTVLSLLAV+YP +KLACYVSDD CSPL ++SL EASKF K+W PFCKKYNV++RAPFRYF              +DWK M+                          + F +T+    S IVKV    +G      E  HLV I REKRP+   H  TG
Sbjct:   53 LAFFCESCFSLVWLIFTCLKWSPAEDIPYINTLNERVHDLPSLDMFVPTADTVRESPIITVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFVKIWAPFCKKYNVRVRAPFRYF-LNPLVATDDSVFSKDWKMMKREYVKLCRKVEDATGDSHWLDADDDFEAFSNTKPNDHSTIVKVVWENKGGVGDEKEVPHLVYISREKRPNYLHHYKTG 272          
BLAST of EY753528 vs. ExPASy Swiss-Prot
Match: CESA4_ARATH (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Arabidopsis thaliana GN=CESA4 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.312e-29
Identity = 55/84 (65.48%), Postives = 67/84 (79.76%), Query Frame = 1
Query:  418 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 669
            +L PVD+FV+T D   EPPIIT NT+LS+LAVDYPV+K++CYVSDD  S L F +L E S+FA+ WVPFCKKYNV+ RAP  YF
Sbjct:  290 KLAPVDVFVSTVDPLKEPPIITANTILSILAVDYPVNKVSCYVSDDGASMLLFDTLSETSEFARRWVPFCKKYNVEPRAPEFYF 373          

HSP 2 Score: 35.4242 bits (80), Expect = 1.312e-29
Identity = 15/38 (39.47%), Postives = 20/38 (52.63%), Query Frame = 2
Query:  185 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 298
            W ++ +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  244 WLISVICEIWFALSWILDQFPKWFPINRETYLDRLSMR 281          
BLAST of EY753528 vs. ExPASy Swiss-Prot
Match: CESA6_ORYSJ (Probable cellulose synthase A catalytic subunit 6 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA6 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.223e-29
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 1
Query:  418 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 669
            +L PVD FV+T D   EPP++T NTVLS+L+VDYPV K++CYVSDD  + L F +L E S+FAK WVPFCKK+N++ RAP  YF
Sbjct:  354 QLAPVDFFVSTVDPSKEPPLVTANTVLSILSVDYPVEKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKFNIEPRAPEWYF 437          

HSP 2 Score: 36.1946 bits (82), Expect = 2.223e-29
Identity = 18/44 (40.91%), Postives = 23/44 (52.27%), Query Frame = 2
Query:  170 NHGFA-WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 298
            N  FA W ++ +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  302 NDAFALWLISVICEIWFAMSWILDQFPKWLPIERETYLDRLSLR 345          
BLAST of EY753528 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.895e-29
Identity = 51/84 (60.71%), Postives = 66/84 (78.57%), Query Frame = 1
Query:  418 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWVPFCKKYNVQIRAPFRYF 669
            +L PVD+FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L F +L E S+FA+ WVPFCKKY+++ RAP  YF
Sbjct:  344 QLAPVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYSIEPRAPEWYF 427          

HSP 2 Score: 36.5798 bits (83), Expect = 2.895e-29
Identity = 16/38 (42.11%), Postives = 21/38 (55.26%), Query Frame = 2
Query:  185 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 298
            W L+ +CE  F   WIL    KW+P+  +TY  RL  R
Sbjct:  298 WLLSVICEIWFALSWILDQFPKWSPINRETYLDRLALR 335          
The following BLAST results are available for this feature:
BLAST of EY753528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLB4_ARATH1.055e-5278.16Cellulose synthase-like protein B4 OS=Arabidopsis ... [more]
CSLB3_ARATH7.961e-5073.56Cellulose synthase-like protein B3 OS=Arabidopsis ... [more]
CSLB6_ARATH2.494e-4848.39Cellulose synthase-like protein B6 OS=Arabidopsis ... [more]
CSLB2_ARATH5.522e-4874.71Cellulose synthase-like protein B2 OS=Arabidopsis ... [more]
CSLB1_ARATH6.347e-4360.19Cellulose synthase-like protein B1 OS=Arabidopsis ... [more]
CSLH1_ORYSJ4.742e-4060.00Cellulose synthase-like protein H1 OS=Oryza sativa... [more]
CSLB5_ARATH2.737e-3442.99Cellulose synthase-like protein B5 OS=Arabidopsis ... [more]
CESA4_ARATH1.312e-2965.48Cellulose synthase A catalytic subunit 4 [UDP-form... [more]
CESA6_ORYSJ2.223e-2960.71Probable cellulose synthase A catalytic subunit 6 ... [more]
CESA2_ORYSJ2.895e-2960.71Probable cellulose synthase A catalytic subunit 2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-003-H07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753528 ID=EY753528; Name=EY753528; organism=Citrus sinensis; type=EST; length=883bp
AAAAAAAAATAACGAGTACTTGTTTTTCAAGCTCATGGCCAATACAAAGT
CGTCATGTCTCCCTCTATACGAAAAAGTTTTTCATAAAAACACATATCAT
AGGGCTTTAGATGTTATCATCTTGTTCCTTCTTCTATGTCTGCTCTTCTA
TCGGCTCTCAACGTTGAAGAATCATGGATTTGCTTGGTTTCTTGCTTTTC
TATGTGAGTCTTGTTTTACTTTCATCTGGATTCTCATCGTCAACTGCAAG
TGGACTCCTTTGACCTACAAAACATATCCCCAACGTCTCCAAGAAAGGTA
ACAAATCAAATAACGTTAGCATTAATAATTTCCGCATCATTTGCAATTGT
CTTTGTCATTTTGCAAGTTACTACACACACACACACACACACATGTGTAC
GACTCAACAGGATACAGGAGCTGCCCCCAGTGGACATGTTTGTGACAACT
GCTGATGCTGAACTCGAGCCGCCAATCATCACTGTAAACACAGTGCTGTC
TTTGTTGGCAGTTGATTATCCAGTTCACAAGCTCGCTTGCTATGTTTCTG
ATGATGCCTGCTCACCTCTCAATTTCTACTCTCTTGTTGAAGCTTCTAAA
TTCGCTAAGCTTTGGGTTCCATTCTGTAAAAAGTATAATGTTCAAATTAG
AGCTCCCTTTAGATACTTCCCAGATAGTGAGCCGTCCGATTCCAGTTCAG
GGGAACTCCTGCAAGACTGGAAAAACATGAGGGAGAATGACTGTTTTCTC
CATACAGAACGCTGAATATCCAACATAGTGAAGGTATATNCGAGACAAAG
AGGTCTCTCAGAGAGATCCCATTTAGTTACTATCAGAGAGAAAAGGCCAA
GCTCCCATACTACAACAGGGCCCTGATGATTGC
back to top