EY753503

Overview
NameEY753503
Unique NameEY753503
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 8.327e-59
Identity = 103/134 (76.87%), Postives = 117/134 (87.31%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            +S+ SNG RVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI+YLIR+ WIPCLEF LE G+VYREHH SP YYDGRYWTMWKLPM GCTD+ QV+KEVGE +KEYP++F+R+IGFDN+R VQC  FI A PPG
Sbjct:   46 SSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPG 179          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.125e-55
Identity = 99/134 (73.88%), Postives = 113/134 (84.33%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            TSIASNG RVQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R  W+PCLEF LE G+VYRE+H SP YYDGRYWTMWKLPM GCTD++QVLKE+ E +K YP SF+RIIGFDN+R VQC  FIA  P G
Sbjct:   49 TSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.470e-55
Identity = 99/134 (73.88%), Postives = 113/134 (84.33%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            TSIASNG RVQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R  W+PCLEF LE G+VYRE+H SP YYDGRYWTMWKLPM GCTD++QVLKE+ E +K YP SF+RIIGFDN+R VQC  FIA  P G
Sbjct:   49 TSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.772e-54
Identity = 98/134 (73.13%), Postives = 109/134 (81.34%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            TSIASNG RVQCM+VWPP G KKFETLSYLP L D  L KE+ YL+R GWIPCLEF LE G+VYREH+ SP YYDGRYWTMWKLPM GCTDA+QVLKE+ E +  YP+ F+RIIGFDN+R VQC  FIA  PPG
Sbjct:   44 TSIASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPG 177          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.620e-54
Identity = 98/140 (70.00%), Postives = 116/140 (82.86%), Query Frame = 1
Query:   25 RQQXSTSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPGC 444
            R   S++  SNG R++CM+VWP  G+KKFETLSYLPPLS EALLK+++YLIRS W+PCLEF  + G+++REH+ SP YYDGRYWTMWKLPM GCTDATQVL EV EV+KEYP ++VRIIGFDNMR VQC  FIA  PPGC
Sbjct:   30 RSNASSASVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEF-SKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPGC 168          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.728e-54
Identity = 97/134 (72.39%), Postives = 111/134 (82.84%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            TSIASNG RVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YL+  GW+PCLEF  E G+VYRE+H SP YYDGRYWTMWKLPM GCTDATQVL E+ E +K YP++++RIIGFDN+R VQC  FIA  PPG
Sbjct:   46 TSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.728e-54
Identity = 97/134 (72.39%), Postives = 111/134 (82.84%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            TSIASNG RVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YL+  GW+PCLEF  E G+VYRE+H SP YYDGRYWTMWKLPM GCTDATQVL E+ E +K YP++++RIIGFDN+R VQC  FIA  PPG
Sbjct:   46 TSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPG 179          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.053e-53
Identity = 97/132 (73.48%), Postives = 108/132 (81.82%), Query Frame = 1
Query:   43 SIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PP 438
            SIASNG RVQCM+VWP TG KKFETLSYLP L D  L KE+ YL+R GWIPCLEF LE G+VYREHH SP YYDGRYWTMWKLPM GCTDA+QVLKE+ E +  YP++F+RIIGFDN+R VQC  FIA  PP
Sbjct:   45 SIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.053e-53
Identity = 98/134 (73.13%), Postives = 109/134 (81.34%), Query Frame = 1
Query:   40 TSIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPG 441
            TSIASNG RVQCM+VWPP   KK+ETLSYLP LS E LL EI YL++SGW+PCLEF  E+G+VYREHH SP YYDGRYWTMWKLPM GCTDATQVL EV E +K YP ++VRIIGFDN+R VQC  FIA  P G
Sbjct:   46 TSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of EY753503 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.797e-53
Identity = 97/134 (72.39%), Postives = 113/134 (84.33%), Query Frame = 1
Query:   43 SIASNGRRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF*LEKGWVYREHHMSP*YYDGRYWTMWKLPMXGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNMRFVQCFIFIAA*PPGC 444
            S  SNG R++CM+VWP  G+KKFETLSYLPPLS EALLK+++YLIRS W+PCLEF  + G+V+REH+ SP YYDGRYWTMWKLPM GCTDATQVL EV EV+KEYP ++VR+IGFDNMR VQC  FIA  PPGC
Sbjct:   37 SSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEF-SKVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPGC 169          
The following BLAST results are available for this feature:
BLAST of EY753503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS_LACSA8.327e-5976.87Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY1.125e-5573.88Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP1.470e-5573.88Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOYBN2.772e-5473.13Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_HORVU3.620e-5470.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_PETHY4.728e-5472.39Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS1_PETHY4.728e-5472.39Ribulose bisphosphate carboxylase small chain SSU8... [more]
RBS_GLYTA1.053e-5373.48Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS8_NICPL1.053e-5373.13Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS2_WHEAT1.797e-5372.39Ribulose bisphosphate carboxylase small chain PW9,... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-003-F01-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753503 ID=EY753503; Name=EY753503; organism=Citrus sinensis; type=EST; length=820bp
AATTCACNGCTCGACCCACGCGTCCGCCAACAANGTAGTACTTCCATTGC
AAGCAACGGCCGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCT
TGAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCT
TTGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTT
GGAATTCTAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACATGTCAC
CATGATACTACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTNT
GGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAA
GGAATACCCACATTCATTCGTCCGAATTATCGGGTTTGACAACATGCGTT
TTGTGCAGTGCTTCATTTTCATTGCTGCCTAGCCTCCAGGCTGTTAGGTT
CCCAATTTAATCTGTGTNCCCCCCCATGTCTTTCTGTTGTTTTTTTTTTG
TGTTACCCCATATTGTTCTTTTTTCCTTGGGGTGTTCGGTTTCGGTTAAT
TTGGCCGCGGGCCGCCGGTGCTCGTGTTCATTCTTTCTCGTGTTCTTTCC
CGGGGCCCCCCCTCTCCCCCCTTTTTTTTTCTTTTTGTGGTTGTGTTATG
GGTCCTGTTAATACTTCAAAGGGGGGGGCTGTTTTTGTGGCTTTCGCTTT
CGCTTCCTCTTTCTTGTTCTCCCNCTGGCCGGTGGTTGACGCGCCCGTTT
GCTGTTTTCCTGGTTGCTTTCTTCCACCATTCTCTTCCGTCTATCCCCCG
GCGCCCCCGTTCGTTATGCG
back to top