EY753487

Overview
NameEY753487
Unique NameEY753487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3190 contig Csv1_Contig3190:1..894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753487 vs. ExPASy Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe GN=pab2 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.924e-36
Identity = 89/164 (54.27%), Postives = 105/164 (64.02%), Query Frame = 2
Query:  164 KELDEMKKRLNDMEEEAAALGEMQAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPR-----RFNPYMGYRGRRPYVPPY 637
            KEL EMK+R+ +ME EAA L  MQ +++ E  A ++          KE  D++SV+VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V  AL LN S LH R LKV PKRTNVPGM + R R     R     GYRGR     PY
Sbjct:   12 KELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRN---------DKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAPY 166          
BLAST of EY753487 vs. ExPASy Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-A PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.924e-36
Identity = 96/241 (39.83%), Postives = 131/241 (54.36%), Query Frame = 2
Query:   26 TRPGIHXRENGGRRAEVYGGE--IPDVEGDMDAHNTDVDMSXXXXXXVKELDEMKKRLNDMEEEAAALGEMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMK---------QYRPRRFNPYMGYRGRRPYVPPYFYSPYGYGKVSRFXRPMRYMPY 703
            T PG   R +GGR     GG   + ++E +        +++        EL+ +K R+ +MEEEA  L E+Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+          +YR R       Y  R  +   Y   P G     R      Y PY
Sbjct:   63 TTPG---RRSGGRGGSGGGGAGGLEELEDEELEEEEPGELTGDQTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARA----SSYSSRSRFYSGYTPRPRGRVYRGRARATSWYTPY 296          
BLAST of EY753487 vs. ExPASy Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-B PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 9.043e-36
Identity = 96/240 (40.00%), Postives = 131/240 (54.58%), Query Frame = 2
Query:   26 TRPGIHXRENGGRRAEVYG-GEIPDVEGDMDAHNTDVDMSXXXXXXVKELDEMKKRLNDMEEEAAALGEMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMK---------QYRPRRFNPYMGYRGRRPYVPPYFYSPYGYGKVSRFXRPMRYMPY 703
            T PG   R +GGR     G G + ++E +        +++        EL+ +K R+ +MEEEA  L E+Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+          +YR R       Y  R  +   Y   P G     R      Y PY
Sbjct:   63 TAPG---RRSGGRGGSGGGAGGLEELEDEELEEEEPGELTGDQTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARA----SSYSSRSRFYSGYTPRPRGRVYRGRARATSWYTPY 295          
BLAST of EY753487 vs. ExPASy Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.488e-35
Identity = 95/241 (39.42%), Postives = 131/241 (54.36%), Query Frame = 2
Query:   26 TRPGIHXRENGGRRAEVYGGE--IPDVEGDMDAHNTDVDMSXXXXXXVKELDEMKKRLNDMEEEAAALGEMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMK---------QYRPRRFNPYMGYRGRRPYVPPYFYSPYGYGKVSRFXRPMRYMPY 703
            T PG   R +GGR     GG   + ++E +        +++        EL+ +K R+ +MEEEA  L E+Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+          +YR R       Y  R  +   Y   P G     R      Y PY
Sbjct:   63 TAPG---RRSGGRGGSGGGGAGGLEELEDEELEEEEPGELTGDQTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARA----SSYSSRSRFYSGYTPRPRGRVYRGRARVTSWYTPY 296          
BLAST of EY753487 vs. ExPASy Swiss-Prot
Match: PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.705e-34
Identity = 86/185 (46.49%), Postives = 113/185 (61.08%), Query Frame = 2
Query:  167 ELDEMKKRLNDMEEEAAALGEMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM---------KQYRPRRFNPYMGYRGRRPYVPPYFYSPYGYGKVSRFXR 682
            EL+ +K R+ +MEEEA  L E+Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+          +YR R  N Y   R R       FYS +      R  R
Sbjct:  114 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSRYRARTTN-YNSSRSR-------FYSGFNSRPRGRIYR 290          
BLAST of EY753487 vs. ExPASy Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 2.909e-34
Identity = 79/154 (51.30%), Postives = 104/154 (67.53%), Query Frame = 2
Query:  167 ELDEMKKRLNDMEEEAAALGEMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 616
            EL+ +K R+ +MEEEA  L E+Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRARYRAR 269          
BLAST of EY753487 vs. ExPASy Swiss-Prot
Match: PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 2.909e-34
Identity = 79/154 (51.30%), Postives = 104/154 (67.53%), Query Frame = 2
Query:  167 ELDEMKKRLNDMEEEAAALGEMQAKVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 616
            EL+ +K R+ +MEEEA  L E+Q +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  118 ELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGIS--TTDRGFPRARYRAR 269          
BLAST of EY753487 vs. ExPASy Swiss-Prot
Match: PABP2_DROME (Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 7.922e-32
Identity = 78/182 (42.86%), Postives = 106/182 (58.24%), Query Frame = 2
Query:  167 ELDEMKKRLNDMEEEAAALGEMQAKVEKEM--GAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP----------------------RRFNPYMGYRGRRPYVPPY 637
            EL+ +K R+ +MEEEA  + +MQ++V+K+M  G+    A V  +   K+E D+RSV+VGNVDY  + EE++ HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NE+   GRQ+KV+ KRTN PG+                           R     MGYRGR  Y  PY
Sbjct:   43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRANYYAPY 224          
BLAST of EY753487 vs. ExPASy Swiss-Prot
Match: PABP2_DROPS (Polyadenylate-binding protein 2 OS=Drosophila pseudoobscura pseudoobscura GN=Pabp2 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.135e-31
Identity = 78/183 (42.62%), Postives = 107/183 (58.47%), Query Frame = 2
Query:  167 ELDEMKKRLNDMEEEAAALGEMQAKVEKEM--GAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMK--------QYRPR---------------RFNPYMGYRGRRPYVPPY 637
            EL+ +K R+ +MEEEA  + +MQ++V+K+M  G+    A V  +   K+E D+RSV+VGNVDY  + EE++ HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NE+   GRQ+KV+ KRTN PG+          +R R                     GYRGR  Y  PY
Sbjct:   43 ELEAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLAAVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARASRACCHSTFRGARRAIRGYRGRANYYAPY 225          
BLAST of EY753487 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.398e-28
Identity = 80/199 (40.20%), Postives = 113/199 (56.78%), Query Frame = 2
Query:   53 NGGRRAEVYGGEIPDVEGDMDAHNTDVDMSXXXXXXVKELDEMKKRLNDMEEEAAALGEMQAKVEKEMGAAQDPANVAAN--------QASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVP-GMKQ-YRPRRFNPYMGYRGR 616
            N G   E    E    E +++ H ++ + +        EL+EMKKR  +MEEEA  L E+Q  +E  +    +   +  N           +EE DSRSV+VGNVDY  T +++  +FQSCGTVNR+TIL+DK  G PKG  YVEF+  +++  A+ LN+S  + RQLK+ PKRTN+P  M+Q   P     + G RGR
Sbjct:    5 NNGEIVEDKDNEKLKGEDNINNHISNHNNTEETSFEDPELEEMKKRFREMEEEAKKLTELQNNLESNI-TGNNGVGIGGNIGGGGGLMNTDQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGRGR 202          
The following BLAST results are available for this feature:
BLAST of EY753487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PAB2_SCHPO6.924e-3654.27Polyadenylate-binding protein 2 OS=Schizosaccharom... [more]
PAB2A_XENLA6.924e-3639.83Polyadenylate-binding protein 2-A OS=Xenopus laevi... [more]
PAB2B_XENLA9.043e-3640.00Polyadenylate-binding protein 2-B OS=Xenopus laevi... [more]
PABP2_XENTR4.488e-3539.42Polyadenylate-binding protein 2 OS=Xenopus tropica... [more]
PABP2_MOUSE1.705e-3446.49Polyadenylate-binding protein 2 OS=Mus musculus GN... [more]
PABP2_HUMAN2.909e-3451.30Polyadenylate-binding protein 2 OS=Homo sapiens GN... [more]
PABP2_BOVIN2.909e-3451.30Polyadenylate-binding protein 2 OS=Bos taurus GN=P... [more]
PABP2_DROME7.922e-3242.86Polyadenylate-binding protein 2 OS=Drosophila mela... [more]
PABP2_DROPS5.135e-3142.62Polyadenylate-binding protein 2 OS=Drosophila pseu... [more]
PABP2_DICDI1.398e-2840.20Polyadenylate-binding protein 2 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-003-D07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753487 ID=EY753487; Name=EY753487; organism=Citrus sinensis; type=EST; length=924bp
CGGGCCGGNAATAAAGGCTCGACCCACGCGTCCGGGAATACATTANAGAG
AGAATGGAGGAAGAAGAGCCGAGGTTTACGGAGGCGAAATCCCTGACGTG
GAAGGTGACATGGACGCTCACAATACTGACGTCGACATGTCGGCGGCCGA
TGACGACGCCGTCAAGGAGCTGGATGAGATGAAGAAGCGGTTGAATGATA
TGGAGGAGGAAGCTGCTGCTCTTGGTGAGATGCAAGCTAAGGTCGAGAAA
GAGATGGGCGCTGCTCAAGATCCTGCTAATGTGGCTGCTAATCAAGCAAG
CAAAGAAGAGGCAGATTCACGATCAGTCTTTGTTGGCAATGTAGATTATG
CATGCACTCCTGAAGAAGTGCAGCAACATTTCCAATCCTGTGGTACTGTA
AACAGGGTAACTATTCTGACAGACAAGTTTGGCCAGCCAAAGGGTTTTGC
TTATGTGGAATTCCTTGAAATAGATGCTGTTCAAGAGGCTCTCCAGTTGA
ATGAGTCTGAATTACATGGCCGTCAACTGAAGGTTTTACCTAAGAGGACA
AATGTCCCTGGTATGAAGCAGTATCGNCCAAGGCGTTTCAATCCTTACAT
GGGGTACCGAGGCAGGAGGCCCTATGTACCTCCTTATTTCTATTCACCTT
ATGGATATGGGAAGGTTTCGAGGTTCANAAGGCCAATGAGGTACATGCCC
TACTACTANCAGATTGTGCTCCTGTTGAAGATGGTGACCTTTGTGGATCA
TCCATAAACTGAAAAATTCAATGTATCATGGTGCTTATGTATCCCGCTTT
AAATAGGAAACAAAGGATTATTACCTACATGTTTATTATTGATGTCTGGA
TGATCAAACCTTTTAACATGAACTTATTGGGATTTCTGGTTGCAAAAAAA
AAAACAAAAAATGAAAGAAAAAAA
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