EY753485

Overview
NameEY753485
Unique NameEY753485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753485_ssr100 microsatellite EY753485_ssr100:100..109. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13103 contig Csv1_Contig13103:1..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY753485 vs. ExPASy Swiss-Prot
Match: Y3721_ARATH (Uncharacterized protein At3g27210 OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.392e-19
Identity = 64/176 (36.36%), Postives = 88/176 (50.00%), Query Frame = 2 
Query:  251 DSAAAMKMDLSSPFGSNSEKLAIPPS----PVKQAATVNAFR-DLGSKEETFFDSQPWLDSDCEDDFYSVNGDFTPSRGNTPVHHNFAGAPQVNSTSLPDKTPG-SISEPSPTGKKPKLAELFRQISKEGSEDQHVDEQNTQGSQNTANGKTEIRTTILDVLPSANGTPYVSGVNS 760
            D+ + +   +   F S  +  +IP +    PVK   + ++ +   GSK+ETFFDSQPWL SD +DDF+SVNGDFTPS GNTP        P+ ++    +K P    S P+P  ++ KL ELFR   +E        E+   GS                   SA  TPY+SG NS
Sbjct:   34 DNVSILSPSVKKSFESPRKSTSIPANNNLTPVKSRWSFSSSKKSFGSKDETFFDSQPWLQSDSDDDFHSVNGDFTPSLGNTPKSSFSDRPPRFHNLIFHEKKPSRGSSSPAPLPRRKKLGELFRDSIRE--------EREESGSS------------------SAISTPYLSGANS 183
The following BLAST results are available for this feature:
BLAST of EY753485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3721_ARATH1.392e-1936.36Uncharacterized protein At3g27210 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-003-D04-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753485 ID=EY753485; Name=EY753485; organism=Citrus sinensis; type=EST; length=859bp
CGCACCTGGATCGGTCCGGATTACCCCTCGCCCACGCGTCCGACGACTTT
TACTGTACTGGGTCTTGTTTTGCTAATTCACTTTCGCTCTTTCTCTNTNT
CTCTCTCTCTGTTCTGGTGCCTCTACAGAAGAAGATTTTCTGATGCTAAG
ACGTCGCTGGCTTCTTATTTTATTTTACCTTTTGTCAATTTAAATAAAGA
GAATTTAGAGACATGGGTTCGTGCGTTCATCAGCACACAAGAGAACAGCA
GACTCAGCCGCTGCCATGAAAATGGACTTATCATCACCATTTGGGTCCAA
TAGTGAGAAACTTGCGATTCCACCTTCCCCCGTGAAACAAGCGGCGACAG
TCAACGCGTTTAGAGACCTTGGTAGTAAAGAGGAAACCTTTTTCGATTCT
CAACCATGGCTAGATTCTGACTGCGAAGATGATTTTTACAGTGTCAATGG
AGATTTTACCCCATCTCGTGGCAATACTCCAGTCCATCACAACTTTGCAG
GGGCTCCTCAAGTCAACAGCACTTCTCTTCCGGACAAAACTCCCGGTTCC
ATTTCTGAACCATCCCCAACAGGAAAGAAACCGAAACTAGCTGAACTGTT
CCGGCAAATTTCTAAAGAAGGTTCAGAAGACCAACATGTTGATGAACAAA
ACACCCAAGGTAGCCAAAACACGGCCAATGGGAAGACAGAAATTAGGACA
ACTATACTTGATGTACTTCCATCAGCAAATGGTACCCCATATGTTTCTGG
AGTTAACTCTGTGTGTTAGAGTGAAAGGACCTCCTATGGANATTCTATGA
TGGAGGACAAGCCAATGAGATTGGCACATGTTGCCTTCCAGCTTTGNTCA
TGGCGTAAT
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