EY753476

Overview
NameEY753476
Unique NameEY753476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 5.665e-79
Identity = 131/179 (73.18%), Postives = 147/179 (82.12%), Query Frame = 3
Query:  141 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNTPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEFFPDPTTLFIVEKIFIGWAEGKRWAVIIKPGCVNTDPILPNNKLTGPGVGVPRG 677
            QK+ S+ GATKASF            A  G+RSV+VSA AADP+ PLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPE+L+WN Q+E+VH RWAMLGAAGIFIPE LTK+G+LNTPSWYTAGE E+F D TTLF++E + IGWAEG+RWA IIKPGCVNTDPI PNNKLTG  VG P G
Sbjct:   21 QKNGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 199          

HSP 2 Score: 30.8018 bits (68), Expect = 5.665e-79
Identity = 13/25 (52.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query:  725 EVKDLRTKGHQKGKWAXLAWVGAWF 799
            ++K+LRTK  + G+ A LA +GAWF
Sbjct:  214 KIKELRTKEIKNGRLAMLAVMGAWF 238          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 2.137e-75
Identity = 127/179 (70.95%), Postives = 140/179 (78.21%), Query Frame = 3
Query:  141 QKSRSVAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNTPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEFFPDPTTLFIVEKIFIGWAEGKRWAVIIKPGCVNTDPILPNNKLTGPGVGVPRG 677
            +++ S+ G TKASF             T   RS +    AADP+ PLWFPGSTPP WLDGSLPGDFGFDPLGL SDPE+LRWN Q+E+VHCRWAMLGAAGIFIPELLTK+GILNTPSWYTAGE E+F D TTLFIVE + IGWAEG+RWA IIKPGCVNTDPI PNNKLTG  VG P G
Sbjct:   21 RRNGSIVGTTKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGG 199          

HSP 2 Score: 30.8018 bits (68), Expect = 2.137e-75
Identity = 13/25 (52.00%), Postives = 19/25 (76.00%), Query Frame = 2
Query:  725 EVKDLRTKGHQKGKWAXLAWVGAWF 799
            ++K+LRTK  + G+ A LA +GAWF
Sbjct:  214 KIKELRTKEIKNGRLAMLAVMGAWF 238          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.791e-36
Identity = 71/134 (52.99%), Postives = 87/134 (64.93%), Query Frame = 3
Query:  282 WFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEFFPDPTTLFIVEKIFIGWAEGKRWAVIIKPGCVNTDPILPNNKLTGPGVGVPRGCF 683
            W PG   P +L GSLPGD GFDPLGL  DPE LRW VQ+E+V+ RWAMLG AG+ +PE+ T +GI+N P WY AG+ E+F   +TLF++E I   + E +RW  I  PG VN DPI     L    VG P G F
Sbjct:   56 WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIF 189          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.991e-36
Identity = 74/155 (47.74%), Postives = 96/155 (61.94%), Query Frame = 3
Query:  219 ATAGTRSVSVSAAAADPNTPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEFFPDPTTLFIVEKIFIGWAEGKRWAVIIKPGCVNTDPILPNNKLTGPGVGVPRGCF 683
            ++A T S  V A   +     W PG   P++L GSL GD GFDPLGL  DPE L+W VQ+E+V+ RWAMLG AG+ +PE+ TK+GI+N P WY AG+ ++F   +TLF++E I   + E +RW  I  PG VN DPI     L    VG P G F
Sbjct:   41 SSAKTSSFKVEAKKGE-----WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIF 190          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.852e-27
Identity = 67/151 (44.37%), Postives = 85/151 (56.29%), Query Frame = 3
Query:  234 RSVSVSAAAADPNTPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWY-TAGELEFFPDPTTLFIVEKIFIGWAEGKRWAVIIKPGCVNTDPILPNNKLTGPGVGVPRGCF 683
            R V+V A  +      W PG   P +LDGSL GD GFDPL L  DPE LRW VQ+++V+ RWAMLG AG+ IPE+LTK G++N P W    G+  +F   +T   V  +   + E +RW  I  PG VN DPI  +  L     G P   F
Sbjct:   26 RDVAVQAKGS------WLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVF 169          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.736e-21
Identity = 60/159 (37.74%), Postives = 78/159 (49.06%), Query Frame = 3
Query:  156 VAGATKASFXXXXXXXXXXXXATAGTRSVSVSAAAADPNTPLWFPGST------PPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEFFPDP---TTLFIVEKIFIGWAEGKRWAVIIKP 605
            ++G  K+S              +  +R + V AAAA P    W P          PEWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAML   GIF+ +  T +       W+ AG       P    TL   + + +GW E KRW     P
Sbjct:   19 LSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKS-WIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDP 170          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.394e-19
Identity = 65/168 (38.69%), Postives = 87/168 (51.79%), Query Frame = 3
Query:  231 TRSVSVSAAAADP------NTPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWY------TAGELEFFPDPTTLFIVEKIFIGWAEGKRWAVIIKPGCVNTDPILPNNKLTGPGVGVP 671
            +R   V AAA  P      + PLWF       +LDGSLPGD+GFDPLGL SDPE        RW    E+++ R+AMLGA G   PE L K+G++      +W+       AG   ++ D  TLF++E   +G+AE +R+    KPG +     L   K  G G G P
Sbjct:   35 SRKGLVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFG-GSGNP 200          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.789e-19
Identity = 57/154 (37.01%), Postives = 76/154 (49.35%), Query Frame = 3
Query:  225 AGTRSVSVSAAAADPNTPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEFFPDP--------TTLFIVEKIFIGWAEGKRWAVIIKPGCVNTDPILPNNK 644
            A  +  +V AAAA  +   W P          PEWLDGSLPGD+GFDPLGLG DP  L+W  ++E++H RWAM    GIF+ +  + +       W+ AG      DP         TL   + I +GW E KRW     P   + +   P +K
Sbjct:   39 ATPKRFTVLAAAAKKS---WIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAG-----ADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSK 178          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 7.561e-19
Identity = 61/161 (37.89%), Postives = 82/161 (50.93%), Query Frame = 3
Query:  234 RSVSVSAAAADPNTPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPETL------RWNVQSEIVHCRWAMLGAAGIFIPELLTKLGIL---NTPSWY------TAGELEFFPDPTTLFIVEKIFIGWAEGKRWAVIIKPGCVNTDPILPNNKLTGPGVGVP 671
            R+ S        N  LWF       +LDG LPGDFGFDPLGL SDPE        +W    E+++ R+AMLGAAG   PE+L K G++      +W+       AG   ++ D  TLF++E   +G+AE +R+    KPG +     L   K  G G G P
Sbjct:   40 RAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLG-GSGDP 198          
BLAST of EY753476 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.200e-18
Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 3
Query:  246 VSAAAADPNTPLWFPGS------TPPEWLDGSLPGDFGFDPLGLGSDPETLRWNVQSEIVHCRWAMLGAAGIFIPELLTKLGILNTPSWYTAGELEFFPDP--------TTLFIVEKIFIGWAEGKRW 587
            V+AAA  P    W P          PEWLDGSLPGDFGFDPLGLG DP  L+W  ++E++H RWAM    GIF+ +  + +       W+ AG      DP         +L   + + +GW E KRW
Sbjct:   44 VAAAAVAPKKS-WIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAG-----ADPGAIAPFSFGSLLGTQLLLMGWVESKRW 159          
The following BLAST results are available for this feature:
BLAST of EY753476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB12_PETHY5.665e-7973.18Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC2.137e-7570.95Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_PEA1.791e-3652.99Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB24_ARATH3.991e-3647.74Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB120_HORVU9.852e-2744.37Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB4_SPIOL4.736e-2137.74Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB23_PEA3.394e-1938.69Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB4A_SOLLC5.789e-1937.01Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB13_SOLLC7.561e-1937.89Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB4B_SOLLC2.200e-1840.63Chlorophyll a-b binding protein CP24 10B, chloropl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-003-C04-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753476 ID=EY753476; Name=EY753476; organism=Citrus sinensis; type=EST; length=909bp
ATTCAGNGCTCGACCCACGCGTCCGNACTTTACTTCACACAAACGCCAGT
CATAATTTCCCTGAAAGCCTTTGCCTGGTAGTAAAAATGGCTTCCGTTTG
TGCTTCCCCTGCCGTTGCAGCCATCTCATCCCCCAGTTCTCAGAAGAGTA
GATCAGTTGCGGGAGCAACAAAGGCTTCTTTCCTTGGTGGGAAGAAGCTG
AAATTGAGAAAAAGCGGAGCAACAGCGGGAACACGATCGGTTTCAGTGAG
TGCGGCTGCAGCTGATCCTAACACGCCTCTCTGGTTCCCAGGCAGCACTC
CTCCTGAATGGCTCGATGGTAGCCTCCCCGGAGACTTCGGCTTCGATCCT
CTTGGTCTTGGATCTGATCCTGAGACGCTGAGATGGAACGTGCAATCAGA
AATTGTGCACTGCAGATGGGCAATGTTAGGAGCTGCAGGAATTTTCATTC
CGGAATTGTTAACAAAACTTGGAATCCTCAACACTCCATCCTGGTACACA
GCTGGGGAGCTAGAGTTCTTTCCAGACCCCACCACCCTGTTCATTGTTGA
GAAGATATTCATAGGCTGGGCAGAGGGCAAACGGTGGGCCGTCATTATAA
AGCCAGGCTGTGTGAACACTGACCCGATCCTTCCCAACAACAAGCTTACC
GGGCCCGGTGTTGGGGTACCCAGGGGGTGCTTTGGTGTTGCCCCCCTTNG
CTTGGGGATCCGGGTCCGCCCTGAGAAGTAAAGGACCTGAGGACCAAGGG
GCATCAGAAGGGGAAATGGGCTATNTTGGCCTGGGTGGGTGCTTGGTTCC
CTCCCTTTTCTCCTGCCCGTGCCCTTTGTCCTTTTTCTGGGTACCCTGGT
GGTTTTGGGNTGGCTCCGCTTGTGGCTGCTGTGCCTCCCGGGGGGTGTAT
ACCAAAAAA
back to top