EY753448

Overview
NameEY753448
Unique NameEY753448
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753448 vs. ExPASy Swiss-Prot
Match: ODPA_PORPU (Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra purpurea GN=pdhA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.143e-32
Identity = 71/118 (60.17%), Postives = 85/118 (72.03%), Query Frame = 3
Query:  480 ITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELXGRPLXAAGAKVDLCHVLK--EHICWXVCIIGEGI 827
            +TK + L LYEDM+LGR+FEDMCAQMYY+GKMFGFVHLYNGQEAVSTG IKLL  +D V STYRDHVHALSKGVP++ VM+EL G+    +  +    H+     +       I EGI
Sbjct:   19 LTKHKLLVLYEDMLLGRNFEDMCAQMYYKGKMFGFVHLYNGQEAVSTGVIKLLDSKDYVCSTYRDHVHALSKGVPSQNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIAEGI 136          
BLAST of EY753448 vs. ExPASy Swiss-Prot
Match: ODPA_PORYE (Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra yezoensis GN=pdhA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.345e-32
Identity = 71/122 (58.20%), Postives = 84/122 (68.85%), Query Frame = 3
Query:  468 SNLLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELXGRPLXAAGAKVDLCHVLK--EHICWXVCIIGEGI 827
            + L + K   L LYEDM+LGR+FEDMCAQMYY+GKMFGFVHLYNGQEAVSTG IKLL   D V STYRDHVHALSKGVP++ VM+EL G+    +  +    H+     +       I EGI
Sbjct:   17 TGLNLNKSNLLVLYEDMLLGRNFEDMCAQMYYKGKMFGFVHLYNGQEAVSTGVIKLLNPTDYVCSTYRDHVHALSKGVPSKNVMAELFGKETGCSKGRGGSMHIFSAPHNFLGGFAFIAEGI 138          
BLAST of EY753448 vs. ExPASy Swiss-Prot
Match: ODPA_RICPR (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia prowazekii GN=pdhA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.270e-15
Identity = 40/98 (40.82%), Postives = 60/98 (61.22%), Query Frame = 3
Query:  486 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELXGRPLXAAGAKVDLCHV 779
            K+E ++ ++DM+L R FE+ C Q+Y  GK+ GF HLY GQEAV +    + KK DS +++YRDH H +  G   + V++EL GR    +  K    H+
Sbjct:   12 KEEYIKSFKDMLLLRRFEEKCGQLYGMGKIGGFCHLYIGQEAVISAVAMIKKKGDSTITSYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHL 109          
BLAST of EY753448 vs. ExPASy Swiss-Prot
Match: ODPA_RICBR (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia bellii (strain RML369-C) GN=pdhA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.166e-15
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  486 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELXGRPLXAAGAKVDLCHV 779
            K+E ++ ++DM+L R FE+ C Q+Y  G++ GF HLY GQEAV +    + +KEDS+V++YRDH H +  G   + V++EL GR    +  K    H+
Sbjct:   12 KEEYIKSFKDMLLLRRFEEKCGQLYGMGEIGGFCHLYIGQEAVISAVDMVKQKEDSMVTSYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHL 109          
BLAST of EY753448 vs. ExPASy Swiss-Prot
Match: ODPA_RICCN (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia conorii GN=pdhA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.826e-15
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 3
Query:  483 TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELXGRPLXAAGAKVDLCHV 779
            TK+E ++ ++DM+L R FE+ C Q+Y  G++ GF HLY GQEAV +    + +K DS +++YRDH H +  G   + V++EL GR    +  K    H+
Sbjct:   11 TKEEYIKSFKDMLLLRRFEEKCGQLYGMGEIGGFCHLYIGQEAVISAIDMVKQKGDSTITSYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHL 109          
BLAST of EY753448 vs. ExPASy Swiss-Prot
Match: ODPA_RHIME (Pyruvate dehydrogenase E1 component subunit alpha OS=Rhizobium meliloti GN=pdhA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.826e-15
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 3
Query:  483 TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELXGR 737
            +K++ L+ Y +M+L R FE+   Q+Y  G + GF HLY GQEAV  G    LK+ D V++ YRDH H L+ G+ AR VM+EL GR
Sbjct:   32 SKEDDLKAYREMLLIRRFEEKAGQLYGMGFIGGFCHLYIGQEAVVVGMQLALKEGDQVITGYRDHGHMLACGMSARGVMAELTGR 116          
BLAST of EY753448 vs. ExPASy Swiss-Prot
Match: ODPA_RICFE (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia felis GN=pdhA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.303e-15
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 3
Query:  483 TKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELXGRPLXAAGAKVDLCHV 779
            TK+E ++ ++DM+L R FE+ C Q+Y  G++ GF HLY GQEAV +    + +K DS +++YRDH H +  G   + V++EL GR    +  K    H+
Sbjct:   11 TKEEYIKSFKDMLLLRRFEEKCGQLYGMGEIGGFCHLYIGQEAVISAVDTVKQKGDSTITSYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHL 109          
BLAST of EY753448 vs. ExPASy Swiss-Prot
Match: ODPA_RICTY (Pyruvate dehydrogenase E1 component subunit alpha OS=Rickettsia typhi GN=pdhA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.233e-15
Identity = 39/98 (39.80%), Postives = 60/98 (61.22%), Query Frame = 3
Query:  486 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELXGRPLXAAGAKVDLCHV 779
            K+E ++ ++DM+L R FE+ C Q+Y  G++ GF HLY GQEAV +    + KK DS +++YRDH H +  G   + V++EL GR    +  K    H+
Sbjct:   12 KEEYIKSFKDMLLLRRFEEKCGQLYGMGEIGGFCHLYIGQEAVISAVELIKKKGDSTITSYRDHAHIILAGTEPKYVLAELMGRATGCSKGKGGSMHL 109          
BLAST of EY753448 vs. ExPASy Swiss-Prot
Match: ODPA_ZYMMO (Pyruvate dehydrogenase E1 component subunit alpha OS=Zymomonas mobilis GN=pdhA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.102e-14
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  486 KQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKK-EDSVVSTYRDHVHALSKGVPARAVMSELXGRPLXAAGAKVDLCHVLK-EH 791
            ++E LE Y  M++ R FE+ C Q+Y  G + GF HLY GQEAV+ G    L+   DSV++ YR+H H L+ G+  + VM+EL GR    +  K    H+   EH
Sbjct:   36 REELLEFYRRMLMIRRFEERCGQLYGLGLIAGFCHLYIGQEAVAVGLQAALQPGRDSVITGYREHGHMLAYGIDPKIVMAELTGRASGISHGKGGSMHMFSTEH 139          
BLAST of EY753448 vs. ExPASy Swiss-Prot
Match: ACOA_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha OS=Bacillus subtilis GN=acoA PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.717e-12
Identity = 36/102 (35.29%), Postives = 59/102 (57.84%), Query Frame = 3
Query:  474 LLITKQEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHALSKGVPARAVMSELXGRPLXAAGAKVDLCHV 779
            L +T+++ L +Y+ M+  R FED   +++ +G + GFVHLY G+EAV+ G    L   DS+ ST+R H H ++KG     +M+E+ G+       K    H+
Sbjct:    9 LSLTEEKALWMYQKMLEIRGFEDKVHELFAQGVLPGFVHLYAGEEAVAVGVCAHLHDGDSITSTHRGHGHCIAKGCDLDGMMAEIFGKATGLCKGKGGSMHI 110          
The following BLAST results are available for this feature:
BLAST of EY753448 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ODPA_PORPU1.143e-3260.17Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_PORYE4.345e-3258.20Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICPR1.270e-1540.82Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICBR2.166e-1540.82Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICCN4.826e-1539.39Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RHIME4.826e-1548.24Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICFE6.303e-1539.39Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_RICTY8.233e-1539.80Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_ZYMMO9.102e-1441.35Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ACOA_BACSU1.717e-1235.29Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-002-H06-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753448 ID=EY753448; Name=EY753448; organism=Citrus sinensis; type=EST; length=883bp
GTTGAGAGTTGGGTGGCTTCCCCTGTCTTTTCAGCCATAATAATATCGAT
CGAAAATCAAACCAAACAAGTAGGCGATTACTCCCAAATATCAAGGCCCC
TCCTCTCTCCCCGTTCCTCGTTCCCTCCGCCTCGTTCTTTCCCTCTTATA
TTTTATTTATACTCTCGTCTCCCTCTCCCATTTACCTCTCACTTTCTCGG
CTCCCAAACACTCTCCTTGCGGATTTCAAAATGGCCACGGCTTACTCTTC
CGCAAAGTTCGTTCAACCATTGTCTCTGAATTCGACAATCAATGGCAGAT
CTCGTGATAATTCCTTGTTTGATCCTCTCAAAACCGGTACTTCTTTCCTT
GGATCCACTCGCAAACTCCGTGTTAATTCTGTTCACTCGAATCAGGGCAA
TGTTCGCCGTCGACTTCCCGTCGTTGCTGTCTCTGAGGTTGTTAAGGAGA
AGAAGGTCAAGTCAATTTCCAATCTGCTGATCACCAAGCAAGAAGGCTTA
GAGCTATATGAAGATATGATCCTTGGCAGATCTTTTGAGGACATGTGCGC
CCAGATGTACTACAGAGGTAAAATGTTCGGTTTTGTTCACCTCTACAATG
GTCAAGAAGCTGTGTCAACTGGATTTATTAAGCTCTTGAAGAAAGAAGAT
TCTGTGGTGAGCACATACCGTGATCACGTGCATGCCCTGAGTAAAGGGGT
CCCTGCTCGTGCTGTGATGAGTGAGCTCNTTGGCAGGCCACTGGNTGCTG
CAGGGGCCAAGGTGGATCTATGCCATGTTCTCAAAGAGCACATCTGCTGG
NGGGTTTGCATTATTGGGGAGGGAATCCAGNTGCTACTGGTGCGCATCAC
CANCATTTTAGAAGGGAGTGTTGAAGGAGCTAC
back to top