EY753441

Overview
NameEY753441
Unique NameEY753441
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13101 contig Csv1_Contig13101:1..892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753441 vs. ExPASy Swiss-Prot
Match: IF41_WHEAT (Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 266.159 bits (679), Expect = 1.845e-70
Identity = 145/257 (56.42%), Postives = 179/257 (69.65%), Query Frame = 1
Query:  142 LPPHGGVASAF-KMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQA------RYLEADNRDWRTRSTTSG-----QEKSLEANQEKMEFGAHEGQLNSQFASAQISTNQGA--GPAPALIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGCIELIFDRAVLEPYICPMYALXCSDLNEKLXSIPSDEPGWERITFKRILL 870
            L PHGG AS   ++GDL  E  ERVRY+R+QLL L+++  +TE IL+++QEIE+E +G+ QSW     N  LQ+Q Q       R+ E DNRDWR R+         +EKS +  +E  E     G+   QF     S++Q A  GP PALIKA+VPWSARRGNLSEKDRVLKTVKGILNKLTPEKFD+LKGQL+DSGITT DILK  I LIF++AV EP  CPMYA  CS+LN+ L + PS+EPG + ITFKR+LL
Sbjct:   40 LRPHGGGASGVSRIGDLHSESRERVRYSRDQLLDLRKITDVTEQILRLQQEIEAELNGDDQSWVRNDSNVQLQTQAQPQVQAQNRFTETDNRDWRARTEKPPAPAVQEEKSWDNIREVKEQYNASGRQQEQFNRQDQSSSQKAQVGPPPALIKADVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDLLKGQLLDSGITTADILKDVISLIFEKAVFEPTFCPMYAQLCSELNDNLPTFPSEEPGGKEITFKRVLL 296          
BLAST of EY753441 vs. ExPASy Swiss-Prot
Match: C3H43_ORYSJ (Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa subsp. japonica GN=Os06g0520600 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.927e-35
Identity = 91/234 (38.89%), Postives = 134/234 (57.26%), Query Frame = 1
Query:  202 HERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWRTRSTTSGQEKSLEAN----QEKMEFGAHEGQLNSQFASAQISTNQG-------AGPAPA-LIKAEVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGCIELIFDRAVLEPYICPMYALXCSDLNEKLXSIPSDEPGWERITFKRIL 867
            H+R+ YTR+QLLQL +  ++ +DILK  Q+I  E +GE +  G  AE +++Q+    R+   D+RDW + S  +  E+    N    +E    G  + + N    S+    ++          P  + LIKAEVP S +RG +S KD VLKT+K ILN  +P+ FD+ KGQLI++ I++ DILK  I LIF++ V EP  C  YA  C+ LN+ L   P ++   E ITFK+ L
Sbjct:  235 HQRISYTRDQLLQLCQNVEVPKDILKFCQDINVELNGEDKISGFGAEKDHVQTPSYKRFDATDSRDWHSWSAQTNWEQKFWDNFSEAKEPYSLGWKQEKFNKPDQSSFHFDSKDQWLKFIKCTPCKSTLIKAEVPLSIQRGIISGKDEVLKTLKSILNTFSPKMFDLQKGQLIETRISSADILKDVINLIFEKVVAEPAFCSTYAQLCTYLNQNLTPFPPEDCDCEEITFKQAL 468          
BLAST of EY753441 vs. ExPASy Swiss-Prot
Match: IF4G2_RABIT (Eukaryotic translation initiation factor 4 gamma 2 OS=Oryctolagus cuniculus GN=EIF4G2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  574 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGCIELIFDRAVLEPYICPMYALXCSDLNEKLXSI----PSDEPGWER-ITFKRILL 870
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKG I LI D+A+ EP    +YA  C  L E   +        +PG ++  TF+R+L+
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLI 168          
BLAST of EY753441 vs. ExPASy Swiss-Prot
Match: IF4G2_PONAB (Eukaryotic translation initiation factor 4 gamma 2 OS=Pongo abelii GN=EIF4G2 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  574 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGCIELIFDRAVLEPYICPMYALXCSDLNEKLXSI----PSDEPGWER-ITFKRILL 870
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKG I LI D+A+ EP    +YA  C  L E   +        +PG ++  TF+R+L+
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLI 168          
BLAST of EY753441 vs. ExPASy Swiss-Prot
Match: IF4G2_MOUSE (Eukaryotic translation initiation factor 4 gamma 2 OS=Mus musculus GN=Eif4g2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  574 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGCIELIFDRAVLEPYICPMYALXCSDLNEKLXSI----PSDEPGWER-ITFKRILL 870
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKG I LI D+A+ EP    +YA  C  L E   +        +PG ++  TF+R+L+
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLI 168          
BLAST of EY753441 vs. ExPASy Swiss-Prot
Match: IF4G2_HUMAN (Eukaryotic translation initiation factor 4 gamma 2 OS=Homo sapiens GN=EIF4G2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  574 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGCIELIFDRAVLEPYICPMYALXCSDLNEKLXSI----PSDEPGWER-ITFKRILL 870
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKG I LI D+A+ EP    +YA  C  L E   +        +PG ++  TF+R+L+
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLI 168          
BLAST of EY753441 vs. ExPASy Swiss-Prot
Match: IF4G2_BOVIN (Eukaryotic translation initiation factor 4 gamma 2 OS=Bos taurus GN=EIF4G2 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.632e-11
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  574 SARRGNLSEKDR---VLKTVKGILNKLTPEKFDVLKGQLIDSGITTPDILKGCIELIFDRAVLEPYICPMYALXCSDLNEKLXSI----PSDEPGWER-ITFKRILL 870
            SA   + +EK+R   + + V+GILNKLTPEKFD L  +L++ G+ +  ILKG I LI D+A+ EP    +YA  C  L E   +        +PG ++  TF+R+L+
Sbjct:   62 SAANNSANEKERHDAIFRKVRGILNKLTPEKFDKLCLELLNVGVESKLILKGVILLIVDKALEEPKYSSLYAQLCLRLAEDAPNFDGPAAEGQPGQKQSTTFRRLLI 168          
The following BLAST results are available for this feature:
BLAST of EY753441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
IF41_WHEAT1.845e-7056.42Eukaryotic initiation factor iso-4F subunit p82-34... [more]
C3H43_ORYSJ1.927e-3538.89Zinc finger CCCH domain-containing protein 43 OS=O... [more]
IF4G2_RABIT9.632e-1140.19Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_PONAB9.632e-1140.19Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_MOUSE9.632e-1140.19Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_HUMAN9.632e-1140.19Eukaryotic translation initiation factor 4 gamma 2... [more]
IF4G2_BOVIN9.632e-1140.19Eukaryotic translation initiation factor 4 gamma 2... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-002-G09-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753441 ID=EY753441; Name=EY753441; organism=Citrus sinensis; type=EST; length=892bp
CCTTTTTCTGTGAGTATTATGCAGGCAGCAGATCAGACGGTGATAAGCTT
GAGACCCGGTGGCGGCGGCGGTCCACGTGGCACCAGATTGTTCACTCATC
GCTTCGATTCCTCATCAACACCCTCGTCTGATTCTCAAACTCTTCCCCCT
CATGGCGGCGTCGCTTCCGCTTTCAAGATGGGGGACTTGCGGTTTGAAGG
TCATGAACGTGTTCGATACACCCGAGAGCAGCTGTTACAACTTAAGGAGG
TTGCTCAACTAACTGAAGACATTTTGAAGATAAAGCAAGAAATTGAGTCT
GAGTTTGATGGCGAAGGTCAAAGCTGGGGTGGTCGTGCAGAAAATAACAA
TCTGCAATCTCAATTCCAAGCTCGTTACTTGGAGGCAGACAATCGTGATT
GGCGTACTCGATCAACCACCTCTGGACAAGAGAAATCCTTGGAAGCAAAT
CAAGAAAAGATGGAATTTGGTGCTCATGAGGGCCAACTTAATTCCCAGTT
CGCAAGTGCTCAAATCTCCACTAACCAAGGGGCAGGACCTGCTCCAGCTC
TAATTAAGGCTGAAGTTCCATGGTCAGCAAGACGAGGAAATCTCTCAGAG
AAGGATCGTGTTCTTAAGACTGTTAAAGGAATACTGAATAAATTGACTCC
AGAGAAGTTTGATGTTCTCAAGGGTCAGCTAATAGACTCTGGAATTACCA
CCCCAGATATTCTGAAGGGGTGTATTGAACTTATATTTGATAGGGCTGTN
CTGGAGCCCTACATTTGTCCCATGTATGCACTTTNATGCTCTGACCTTAA
CGAGAAGCTNNCCTCCATTCCTTCTGATGAGCCTGGGTGGGAAAGAATCA
CCTTTAAGCGGATCCTTTTGATCATTGCCAGNAGGCATTGAG
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