EY753417

Overview
NameEY753417
Unique NameEY753417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13633 contig Csv1_Contig13633:3..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY753417 vs. ExPASy Swiss-Prot
Match: Y2165_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g16250 OS=Arabidopsis thaliana GN=At2g16250 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.845e-45
Identity = 102/207 (49.28%), Postives = 137/207 (66.18%), Query Frame = 1 
Query:    4 TSVASNSGSSVATCAYDVYCFGKVLLEVVTGKLGISKSDDATTREWLEHTLPHITLHDKEMLTKIIDPSLILDEDLLEEVWAMAIVARSCLDPKPAKRPPMKYILKALENPFKVVRQE---XXXXXXXXXXXXXXXXXXXXXGSWRQSSSDVATV---AHTR-----EGISGLKQLGRVLS---HDSGGIEHSSSNKRSSNEIFPEP 582
            +S  S+SG + A C+YDVYCFGKVLLE+VTGKLGIS  D+A  +E++E  LP+I+ ++KE++TKI+DPSL++DEDLLEEVWAMAI+A+SCL+PKP +RP M++I+ ALENP KVVR++                        GSWRQS+SDV  V   A T       G +GL+  G   S   +++     SSS +R S+EI PEP
Sbjct:  699 SSEPSSSGVTNAICSYDVYCFGKVLLELVTGKLGISSPDNALAKEYMEEALPYISTNEKELVTKILDPSLMVDEDLLEEVWAMAIIAKSCLNPKPTRRPLMRHIVNALENPLKVVREDTNSGSGSSRLRTNSSRGSWNAAIFGSWRQSASDVTAVQAGATTSGGGGGGGGNGLRNSGSQGSSGRNNNNNGNSSSSRRRQSSEIVPEP 905
The following BLAST results are available for this feature:
BLAST of EY753417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2165_ARATH5.845e-4549.28Probable LRR receptor-like serine/threonine-protei... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-002-E07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753417 ID=EY753417; Name=EY753417; organism=Citrus sinensis; type=EST; length=880bp
ANAACCTCTGTTGCAAGCAATTCAGGCTCGTCCGTGGCAACTTGTGCCTA
CGATGTGTACTGCTTTGGAAAAGTCCTACTTGAGGTTGTAACTGGCAAGC
TTGGTATTAGCAAATCAGATGATGCTACTACACGAGAGTGGTTGGAACAC
ACACTACCTCACATCACTTTACACGACAAGGAAATGTTGACCAAGATCAT
CGACCCATCTCTGATTCTAGATGAGGATCTACTGGAAGAAGTATGGGCCA
TGGCAATTGTAGCCAGATCATGCCTTGACCCTAAGCCTGCCAAACGACCG
CCAATGAAATATATTCTAAAAGCATTGGAAAACCCTTTTAAAGTGGTGAG
ACAGGAGAGTTTCAGCTCTGCGAGGCTGCGCACAACTTCATCTAGGCGAT
CTTGGAGTACTGCTTTCTTTGGTAGTTGGCGACAGAGCTCATCAGATGTT
GCAACTGTTGCTCACACAAGAGAAGGTATCAGTGGTCTAAAACAGTTGGG
AAGAGTACTTTCTCACGATAGTGGTGGAATTGAGCACTCATCTTCGAATA
AAAGGTCATCAAATGAAATATTCCCTGAACCGTTAGAAATGGAAGATATG
GAGAGGCAAGACGAACATTAGTTCGAAGTGTGCGCTTGTGATTATCTTTA
AATGATTTTGTGGCTTCCCATCTGAGCGCCTGCTCGATAGCATTTCTTGA
CCCCCGTCTTTTATATTTGCCTCATCACTGGGGTCCAAAACAATTTTTTG
AAGACAAGTTGTTTGACCGCATGATGATGAGGATCCCGTGGAGCTTATAT
GTACAGGCTAAGAAAGGGTTGAAGAGCATTCTTGTAAAAAGTGAAGCGAA
GAGGTTTTCATTTTTTTAACATNCCTTTCG
back to top