EY753411

Overview
NameEY753411
Unique NameEY753411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753411_ssr72 microsatellite EY753411_ssr72:72..81. BLAST: Citrus ESTs to Prunus persica proteins V1
EY753411_ssr352 microsatellite EY753411_ssr352:352..366. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY753411 vs. ExPASy Swiss-Prot
Match: Y4213_ARATH (UPF0480 protein At4g32130 OS=Arabidopsis thaliana GN=At4g32130 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.516e-35
Identity = 75/110 (68.18%), Postives = 91/110 (82.73%), Query Frame = 3 
Query:  492 AGTHLIEVAAIGYFFSPVRVDVSARHPGRVQAPLTETRRGLNELVLEPLGEEPFYQIKKPFSIMSLVKSPLGLMKGFMPVVVSLLP*LMENMVPWGDETPSEEMRTQGCP 821
            AGTHLIEV A+GYFFSPVRVDVSARH G+VQA LTETRR L ELVLEPL  E +Y++++PFS+MS+VKSP+GLM GFM VVV L+P LMEN+ P   ++  E+MR+QG P
Sbjct:   83 AGTHLIEVYALGYFFSPVRVDVSARHRGKVQATLTETRRSLTELVLEPLRAEQYYEMREPFSVMSIVKSPMGLMVGFMVVVVFLMPKLMENIDPEEMKSAQEQMRSQGVP 192
The following BLAST results are available for this feature:
BLAST of EY753411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4213_ARATH1.516e-3568.18UPF0480 protein At4g32130 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-002-E01-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753411 ID=EY753411; Name=EY753411; organism=Citrus sinensis; type=EST; length=908bp
TGCCGGNATTCAAGGGCTCGACCCACGCGTCCGTCCAAATCTTTTCTCTC
AGTATTTTTCATAAATTTATTTCTCTCTCTCGTCTCTTCGGCCGTTGCAG
TTTCGAGCGGGTCTGGTGATGGCTTCAGCATCAGTGGCCGTGTCAAACTT
CCCGGTATGAGTTTGAAAGCATTTGGCTCTCCTGGAGGAAAAGCATCTAA
TGTGAAAGTTGTACTCCCTGGTGGCGAACATGTGACATTTCTGAGGCCCG
ATGGATATTTTTCATTGTATCCTACTAATTATATTTTCTCATGTTCTTTT
CTTGTTCATCCAGTCAAAAATTCATTTGTTCTATTTATTTTACCCATTTC
GTCTTCTTCTTCTTCTTTTTTTTTTTTTCAATACATTCCTACATGTAGAT
TGTTTATTTCCCAATGATTTTATGGAAGATGGGAAAAGAAGTTTTCATTT
TTTAATTCCTTGATTTGTCTGCATAAAGCCAGAACATGTCGGCAGGGACT
CATTTAATTGAAGTGGCTGCAATTGGTTATTTCTTTTCTCCGGTCCGGGT
TGATGTTAGTGCCAGACACCCAGGCAGGGTTCAGGCTCCTTTGACGGAAA
CCAGGAGGGGTCTGAATGAATTGGTTTTAGAGCCTTTGGGAGAGGAGCCT
TTTTACCAGATTAAAAAACCTTTTTCCATAATGTCTCTTGTGAAAAGCCC
ATTGGGTCTCATGAAGGGATTTATGCCTGTGGTTGTGTCCCTTTTGCCTT
AATTAATGGAAAATATGGTTCCCTGGGGAGATGAAACCCCTTCAGAGGAG
ATGAGGACCCAGGGGTGCCCTCCCTTCCAATTTTTTCCCTGGCCCGGAAA
AGTCTGCCACTGCCCTGAAACGCTTTCCTTAATTGGCTTAGGGCCCCTTT
TACACACA
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