EY753368

Overview
NameEY753368
Unique NameEY753368
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13093 contig Csv1_Contig13093:1..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753368 vs. ExPASy Swiss-Prot
Match: CPL4_ARATH (RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 1.134e-78
Identity = 143/227 (63.00%), Postives = 174/227 (76.65%), Query Frame = 1
Query:   40 RPYVLEMAKLLDPSREYFNARVISRDDGTQRHQKGLDVVLGQESAVLILDDTENAWTKHRDNLILMERYHFFASSCRQFGYHCQSLSQLRSDESELEGALASVLKVLKRIHNIFFDELANDLAGRDVRQVLKMVRGEVLKGCKLVFSHVFPTKFPADTHYLWKMAEQLGATCLIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRWIETANFFVAKATXRELSCE 720
            R Y  +MAKLLDP  EYF  RVISRDDGT RH+K LDVVLGQESAVLILDDTENAW KH+DNLI++ERYHFF+SSCRQF +  +SLS+L+SDESE +GALA+VLKVLK+ H +FF+ +   ++ RDVR +LK VR E+LKGCK+VFS VFPTK   + H LWKMAE+LGATC  E+D SVTHVV+ D  TEK+RWA +E K++V   WI+ AN+   K        E
Sbjct:  204 RNYARQMAKLLDPKGEYFGDRVISRDDGTVRHEKSLDVVLGQESAVLILDDTENAWPKHKDNLIVIERYHFFSSSCRQFDHRYKSLSELKSDESEPDGALATVLKVLKQAHALFFENVDEGISNRDVRLMLKQVRKEILKGCKIVFSRVFPTKAKPEDHPLWKMAEELGATCATEVDASVTHVVAMDVGTEKARWAVREKKYVVHRGWIDAANYLWMKQPEENFGLE 430          
BLAST of EY753368 vs. ExPASy Swiss-Prot
Match: CPL3_ARATH (RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana GN=CPL3 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 1.109e-41
Identity = 96/226 (42.48%), Postives = 131/226 (57.96%), Query Frame = 1
Query:   46 YVLEMAKLLDPSREYFNARVISRDD------GTQRHQKGLDV--VLGQESAVLILDDTENAWTKHRDNLILMERYHFFASSCRQFGYHCQSLSQLRSDESELEGALASVLKVLKRIHNIFFDELANDLAGRDVRQVLKMVRGEVLKGCKLVFSHVFPT-KFPADTHYLWKMAEQLGATCLIELDPSVTHVVSTDARTEKSRWAAKEAKFLVDPRWIETANFFVAKA 696
            Y  EMAKLLDP    FN RVIS+ D      G +R  K  D+  V+G ES+V+I+DD+   W +H+ NLI +ERY +F  S RQFG    SL +L  DE   EG LAS L V+++IH  FF   + D    DVR +L   + ++L GC++VFS + P  +     H LW+ AEQ GA C  ++D  VTHVV+    T+K  WA    +F+V P W+E + F   +A
Sbjct: 1009 YATEMAKLLDPKGVLFNGRVISKGDDGDPLDGDERVPKSKDLEGVMGMESSVVIIDDSVRVWPQHKMNLIAVERYLYFPCSRRQFGLLGPSLLELDRDEVPEEGTLASSLAVIEKIHQNFFSHTSLDEV--DVRNILASEQRKILAGCRIVFSRIIPVGEAKPHLHPLWQTAEQFGAVCTTQVDEHVTHVVTNSLGTDKVNWALTRGRFVVHPGWVEASAFLYQRA 1232          
The following BLAST results are available for this feature:
BLAST of EY753368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CPL4_ARATH1.134e-7863.00RNA polymerase II C-terminal domain phosphatase-li... [more]
CPL3_ARATH1.109e-4142.48RNA polymerase II C-terminal domain phosphatase-li... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-002-A03-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753368 ID=EY753368; Name=EY753368; organism=Citrus sinensis; type=EST; length=926bp
GGTCGTGTGCCGGNATTCCAAGGCCGACCCACGCGTCCGAGGCCTTATGT
CTTAGAAATGGCTAAGTTGCTTGATCCCAGCAGAGAGTACTTCAATGCTA
GAGTGATTTCACGAGATGATGGCACTCAAAGACATCAGAAGGGCCTTGAT
GTGGTACTGGGGCAAGAAAGTGCTGTTCTGATTCTTGATGACACAGAAAA
CGCATGGACGAAGCACAGAGACAATTTGATACTGATGGAAAGATATCATT
TCTTTGCTTCAAGTTGTCGCCAATTTGGCTACCACTGTCAATCTCTATCT
CAGTTGAGGAGTGATGAAAGTGAGCTAGAGGGTGCACTTGCATCTGTTCT
TAAAGTTCTCAAGCGAATCCACAATATTTTCTTCGATGAACTTGCGAACG
ATCTTGCTGGCAGAGATGTGAGGCAGGTGCTCAAAATGGTCCGGGGGGAA
GTCTTAAAGGGGTGTAAACTTGTCTTCAGTCATGTTTTTCCAACTAAATT
CCCAGCAGATACTCACTATCTATGGAAGATGGCGGAGCAGTTAGGAGCCA
CGTGCTTGATAGAACTTGATCCATCAGTGACACATGTGGTTTCAACAGAT
GCTCGAACAGAAAAGTCTCGCTGGGCAGCAAAGGAAGCTAAGTTTTTGGT
GGATCCAAGGTGGATAGAGACAGCCAACTTTTTTGTGGCAAAGGCAACCC
NGAGAGAACTTTCCTGTGAAACAAAACAAACCTGAAGAGAACTTTCATGC
GNAACAAATGAAGGATCAATAACGGAAAGATTTATGTAGCTGCTAACCCT
GCAGTGAATCTTTATGTATGTAGCAAGTGTTGATGAATTGCTGACTGGGA
AAATATCAGTAGAGTTTGCCCAACACTCGAAGATACTCAGCTTGATTCCG
GAACCTGAAAGCTTATGATATTTTGC
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