EY753362 | Citrus Genome Database

Overview


Name	EY753362
Unique Name	EY753362
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	847

Libraries


Library Name	Type
Sweet orange leaf, field plant A	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY753362 vs. ExPASy Swiss-Prot
Match: SSU72_DICDI (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Dictyostelium discoideum GN=ssu72 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.558e-31
Identity = 41/76 (53.95%), Postives = 61/76 (80.26%), Query Frame = 3

Query:  228 RYAMVCSSNQNRSMEAHYLLKRHGF-DVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYLLSAL 452
            R AMVC+SNQNRS+EAH+L  ++GF ++ S+GT AH KLPGPS+ +PN++ FGTPY++++  L+ +D ELY+ + L
Sbjct:   23 RIAMVCASNQNRSLEAHHLFVKNGFKNIRSFGTSAHCKLPGPSIHQPNIFSFGTPYQEIYTSLKNQDQELYIRNGL 98

HSP 2 Score: 46.595 bits (109), Expect = 2.558e-31
Identity = 19/43 (44.19%), Postives = 32/43 (74.42%), Query Frame = 1

Query:  562 KDIGVKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTRE 690
            ++I VK AP++WQ+      F+IV+TF+++V+D V+EDL  R+
Sbjct:  104 RNISVKLAPEKWQEEQ-QSKFEIVYTFDQRVYDAVIEDLLQRD 145

HSP 3 Score: 33.4982 bits (75), Expect = 2.558e-31
Identity = 16/37 (43.24%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  690 TAL*KTVLVINLEVKDTHEEAAMGGRLTFDLCQEIEQ 800
            ++L + V +INL+VKDTHEEA  G +   ++   IE+
Sbjct:  148 SSLLQPVHIINLQVKDTHEEAVGGAQHALEITSIIEK 184

[Close]

BLAST of EY753362 vs. ExPASy Swiss-Prot
Match: SSU72_ASHGO (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Ashbya gossypii GN=SSU72 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.129e-26
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = 3

Query:  216 TMKYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYLLSALTQ 458
            T   R   VC+SN NRSME+H +LK  G+DVSSYGTG+ V+LPG S+ +PNVY FGTPY  +++DL  +  E Y  + L +
Sbjct:   81 TSTLRLCTVCASNNNRSMESHRVLKEAGYDVSSYGTGSAVRLPGLSIDKPNVYPFGTPYNDIYNDLLAQSAERYKSNGLLE 161

HSP 2 Score: 41.2022 bits (95), Expect = 1.129e-26
Identity = 20/45 (44.44%), Postives = 27/45 (60.00%), Query Frame = 1

Query:  574 VKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFRKL 708
            +K AP++W D+     FD VFT EE+ FD+V EDL  R     K+
Sbjct:  169 IKKAPEKWHDS--QKVFDFVFTCEERCFDSVCEDLMNRGGQLNKI 211

HSP 3 Score: 30.4166 bits (67), Expect = 1.129e-26
Identity = 13/31 (41.94%), Postives = 21/31 (67.74%), Query Frame = 3

Query:  702 KTVLVINLEVKDTHEEAAMGGRLTFDLCQEI 794
            K V VINL+++D +E A +GGR   +L + +
Sbjct:  210 KIVHVINLDIRDDNENAKIGGRAMLELVKAL 240

[Close]

BLAST of EY753362 vs. ExPASy Swiss-Prot
Match: SSU72_GIBZE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gibberella zeae GN=SSU72 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.201e-24
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 3

Query:  222 KYRYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFG-TPYKQMFDDLRRKDPELY 437
            K ++  VC+SN NRSMEAH  L +  + V S+GTG+ V+LPGP++ +PNVY F  T Y  MF +L  KD  LY
Sbjct:   24 KLKFCTVCASNNNRSMEAHLRLSQADYPVISFGTGSLVRLPGPTITQPNVYHFNKTSYDSMFKELESKDARLY 96

HSP 2 Score: 37.7354 bits (86), Expect = 1.201e-24
Identity = 24/62 (38.71%), Postives = 30/62 (48.39%), Query Frame = 1

Query:  571 GVKAAPQRWQD---------NALD--------GSFDIVFTFEEKVFDTVVEDLNTREQPFRK 705
            GVK  P+RWQD         +A D        G  DIV T EE+ +D VV+DL  R  P  +
Sbjct:  110 GVKWGPERWQDWQVGVPRLQHAKDRGSEGTEGGLVDIVITCEERCWDAVVDDLMNRGSPLNR 171

HSP 3 Score: 36.5798 bits (83), Expect = 1.201e-24
Identity = 16/31 (51.61%), Postives = 22/31 (70.97%), Query Frame = 3

Query:  702 KTVLVINLEVKDTHEEAAMGGRLTFDLCQEI 794
            + V VIN+E+KD HEEAA+GG+   DL   +
Sbjct:  171 RPVHVINVEIKDNHEEAAVGGQGILDLANSL 201

HSP 4 Score: 21.557 bits (44), Expect = 1.201e-24
Identity = 9/12 (75.00%), Postives = 9/12 (75.00%), Query Frame = 2

Query:  530 YKRNGILPMLKR 565
            YK NGIL ML R
Sbjct:   96 YKNNGILNMLNR 107

[Close]

BLAST of EY753362 vs. ExPASy Swiss-Prot
Match: SSU72_KLULA (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Kluyveromyces lactis GN=SSU72 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.415e-24
Identity = 37/70 (52.86%), Postives = 53/70 (75.71%), Query Frame = 3

Query:  228 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELY 437
            ++  VC+SN NRSME+H +L+  G+DVSSYGTG+ V+LPG S+ +PNVY FGTPY  +++DL  +  + Y
Sbjct:   11 KFCTVCASNNNRSMESHRVLEEAGYDVSSYGTGSAVRLPGLSIDKPNVYSFGTPYDDIYNDLISQSEDRY 80

HSP 2 Score: 38.891 bits (89), Expect = 3.415e-24
Identity = 19/38 (50.00%), Postives = 24/38 (63.16%), Query Frame = 1

Query:  574 VKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTR 687
            +K AP++W D      FD VFT EE+ FD+V EDL  R
Sbjct:   95 LKKAPEKWHDGRK--VFDFVFTCEERCFDSVCEDLMNR 130

HSP 3 Score: 26.5646 bits (57), Expect = 3.415e-24
Identity = 9/18 (50.00%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  714 VINLEVKDTHEEAAMGGR 767
            +IN+++KD +E A +GGR
Sbjct:  140 IINIDIKDDNENAKIGGR 157

HSP 4 Score: 21.557 bits (44), Expect = 3.415e-24
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = 2

Query:  530 YKRNGILPMLKR 565
            YK+NG+L ML R
Sbjct:   80 YKQNGVLEMLDR 91

[Close]

BLAST of EY753362 vs. ExPASy Swiss-Prot
Match: SSU72_YEAST (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Saccharomyces cerevisiae GN=SSU72 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.371e-22
Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = 3

Query:  228 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELYLLSALTQ 458
            ++  VC+SN NRSME+H +L+  G++VSSYGTG+ V+LPG S+ +PNVY FGTPY  +++DL  +  + Y  + L Q
Sbjct:   10 KFCTVCASNNNRSMESHKVLQEAGYNVSSYGTGSAVRLPGLSIDKPNVYSFGTPYNDIYNDLLSQSADRYKSNGLLQ 86

HSP 2 Score: 40.4318 bits (93), Expect = 2.371e-22
Identity = 20/45 (44.44%), Postives = 27/45 (60.00%), Query Frame = 1

Query:  574 VKAAPQRWQDNALDGSFDIVFTFEEKVFDTVVEDLNTREQPFRKL 708
            +K AP++WQ++     FD VFT EE+ FD V EDL  R     K+
Sbjct:   94 LKKAPEKWQESTK--VFDFVFTCEERCFDAVCEDLMNRGGKLNKI 136

[Close]

BLAST of EY753362 vs. ExPASy Swiss-Prot
Match: SSU72_DANRE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Danio rerio GN=ssu72 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.482e-22
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 3

Query:  228 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELY 437
            R A+VCSSNQNRSMEAH +L + GFDV S+GTG HVKLPGP+  +PN+Y+F T Y+QM++DL RKD ELY
Sbjct:    7 RVAVVCSSNQNRSMEAHNILSKRGFDVRSFGTGTHVKLPGPAPDKPNIYDFKTTYEQMYNDLVRKDKELY 76

[Close]

BLAST of EY753362 vs. ExPASy Swiss-Prot
Match: SSU72_RAT (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Rattus norvegicus GN=Ssu72 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.217e-21
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 3

Query:  228 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELY 437
            R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++DL RKD ELY
Sbjct:    7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELY 76

[Close]

BLAST of EY753362 vs. ExPASy Swiss-Prot
Match: SSU72_MOUSE (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Mus musculus GN=Ssu72 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.217e-21
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 3

Query:  228 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELY 437
            R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++DL RKD ELY
Sbjct:    7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELY 76

[Close]

BLAST of EY753362 vs. ExPASy Swiss-Prot
Match: SSU72_HUMAN (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Homo sapiens GN=SSU72 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.217e-21
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 3

Query:  228 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELY 437
            R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++DL RKD ELY
Sbjct:    7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELY 76

[Close]

BLAST of EY753362 vs. ExPASy Swiss-Prot
Match: SSU72_CHICK (RNA polymerase II subunit A C-terminal domain phosphatase SSU72 OS=Gallus gallus GN=SSU72 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.217e-21
Identity = 47/70 (67.14%), Postives = 56/70 (80.00%), Query Frame = 3

Query:  228 RYAMVCSSNQNRSMEAHYLLKRHGFDVSSYGTGAHVKLPGPSLREPNVYEFGTPYKQMFDDLRRKDPELY 437
            R A+VCSSNQNRSMEAH +L + GF V S+GTG HVKLPGP+  +PNVY+F T Y QM++DL RKD ELY
Sbjct:    7 RVAVVCSSNQNRSMEAHNILSKRGFSVRSFGTGTHVKLPGPAPDKPNVYDFKTTYDQMYNDLLRKDKELY 76

The following BLAST results are available for this feature:

BLAST of EY753362 vs. ExPASy Swiss-Prot

BLAST of EY753362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23


Match Name	E-value	Identity	Description
SSU72_DICDI	2.558e-31	53.95	RNA polymerase II subunit A C-terminal domain phos...	[more]
SSU72_ASHGO	1.129e-26	51.85	RNA polymerase II subunit A C-terminal domain phos...	[more]
SSU72_GIBZE	1.201e-24	50.68	RNA polymerase II subunit A C-terminal domain phos...	[more]
SSU72_KLULA	3.415e-24	52.86	RNA polymerase II subunit A C-terminal domain phos...	[more]
SSU72_YEAST	2.371e-22	49.35	RNA polymerase II subunit A C-terminal domain phos...	[more]
SSU72_DANRE	6.482e-22	67.14	RNA polymerase II subunit A C-terminal domain phos...	[more]
SSU72_RAT	3.217e-21	67.14	RNA polymerase II subunit A C-terminal domain phos...	[more]
SSU72_MOUSE	3.217e-21	67.14	RNA polymerase II subunit A C-terminal domain phos...	[more]
SSU72_HUMAN	3.217e-21	67.14	RNA polymerase II subunit A C-terminal domain phos...	[more]
SSU72_CHICK	3.217e-21	67.14	RNA polymerase II subunit A C-terminal domain phos...	[more]

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Properties


Property Name	Value
Genbank description	CS12-C1-001-001-H07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY753362 ID=EY753362; Name=EY753362; organism=Citrus sinensis; type=EST; length=847bp
CCCGCGTCCGAAATCTCGAATAGACCCAAAGCCCAAAACAGTGGCGTCGA
GCACCAAAGAGAACCAAATCAACAACGCCGCTGAAATCCCGCCGCATCGC
ACTCCGGTCGCCACCAGCACACTGCCGCAAGCAGTCACCGTCGACTGTAC
TAACATTTTTTGTAGAGACTCTACTCGAGTTGGAATTGGATCAAGAAGAC
TGGGAGTAGGCAATCACCATGAAATACCGGTATGCCATGGTATGCTCGTC
CAACCAGAACCGAAGTATGGAGGCACATTATCTCCTCAAGAGACATGGCT
TCGACGTTTCATCCTATGGCACTGGAGCTCATGTTAAGCTCCCTGGACCA
TCACTGAGAGAACCTAATGTCTACGAATTTGGTACTCCCTACAAACAGAT
GTTTGATGATCTCCGCCGCAAAGACCCCGAACTGTATCTTCTTTCTGCCT
TAACTCAATTCAAGTTTTTAATTTATTATATATTTTATTGGAGAAATGGA
ACTTACTTTGGTTAGTTAATTGTCCTANGTACAAGCGTAATGGTATTTTG
CCAATGCTTAAAAGGATATAGGTGTGAAAGCGGCACCTCAACGTTGGCAA
GATAATGCTCTTGATGGTTCCTTTGATATTGTTTTTACTTTTGAAGAAAA
GGTTTTTGACACGGTTGTTGAAGATCTCAATACTCGAGAACAGCCCTTTA
GAAAACTGTTCTGGTGATCAACTTGGAGGTGAAAGATACCCATGAGGAGG
CAGCCATGGGAGGACGACTAACTTTTGATCTGTGCCAGGAGATCGAACAG
CTGAATCATGGGAGGAGTCTATGGAGGACATATAGCTGCATTTGAGA