EY753349

Overview
NameEY753349
Unique NameEY753349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13083 contig Csv1_Contig13083:1..828. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753349 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.047e-24
Identity = 74/154 (48.05%), Postives = 92/154 (59.74%), Query Frame = 1
Query:  253 EKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVS----DNSGQDVSARNMAAPRNWESMNLFPQQAGFA------PKNDTPNMIDSSLN-KPAPQTAQMTIFYGGQVIVFNDFPA**ANEIMQLASHGSSLS 681
            +K SFSQTCS LSQYLKE GSFGDLSLG++   + NG     R+P  TTM+LFP      D+  QDV           +  NLFP+Q  F+      PK D   M  ++ + KP  QTA +TIFY GQVIVFNDF A  A E++ LAS G++ S
Sbjct:   19 KKPSFSQTCSRLSQYLKENGSFGDLSLGMACKPDVNGTLGNSRQP-TTTMSLFPCEASNMDSMVQDV-----------KPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANS 160          
BLAST of EY753349 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.171e-21
Identity = 64/149 (42.95%), Postives = 88/149 (59.06%), Query Frame = 1
Query:  256 KSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSARNMAAPRNWESMNLFPQQAGFAPKNDTPNMIDSSL-------NKPAPQTAQMTIFYGGQVIVFNDFPA**ANEIMQLASHGSSLS 681
            K SFSQTC+ LS+YLKE GSFGDLSLG++   + NG    P     T MNLFP  + SG D S    A   + +   +FP+Q+ F+  + +    D  +        KP  Q+A +TIFYGG+V+VF+DF A  A E++ LA+ GS+ S
Sbjct:   15 KPSFSQTCTRLSRYLKEKGSFGDLSLGMTCKPDVNGGSRQP-----TMMNLFP-CEASGMDSS----AGQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKS 153          
BLAST of EY753349 vs. ExPASy Swiss-Prot
Match: TI11B_ARATH (Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11B PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.201e-12
Identity = 60/194 (30.93%), Postives = 92/194 (47.42%), Query Frame = 1
Query:  250 PEKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQD--VSARNMAAPRNWESMNLFPQQAGFAPKNDTPNMID-SSLNKPAPQT--AQMTIFYGGQVIVFNDFPA**ANEIMQLASHGSSLSHGDVYPXMQLPAQGYNSFAG*LPQSQLNHSPGSLTLPTSNSRTRS 816
            PEKS+FSQ CSLLS+YLKE GSFG++++G++                 + + L    D  GQ   +     +  R ++ +  F          D    ID S   K AP++  +Q+TIF+GG+V+VFN+FP   A EIM++A   + ++               NS      QS +N    ++ +P  N  T S
Sbjct:    7 PEKSNFSQRCSLLSRYLKEKGSFGNINMGLARK---------------SDLELAGKFDLKGQQNVIKKVETSETRPFKLIQKFSIGEASTSTEDKAIYIDLSEPAKVAPESGNSQLTIFFGGKVMVFNEFPEDKAKEIMEVAKEANHVA-----------VDSKNS------QSHMNLDKSNVVIPDLNEPTSS 168          
The following BLAST results are available for this feature:
BLAST of EY753349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TI10A_ARATH1.047e-2448.05Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10B_ARATH9.171e-2142.95Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11B_ARATH1.201e-1230.93Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-G06-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753349 ID=EY753349; Name=EY753349; organism=Citrus sinensis; type=EST; length=828bp
CCACGCGTCCGGGCTTAAAAGCACCCCAAATTGTTATTATTCCTCGTGTC
CAATCAACAGATAAGCCTTTTTCTCCTTACAAATACAGATTGATCATCCA
ACAGAACAACTTCACCAATTCAATTCTGCAGCGTCAGTTGCAGCGCACTA
GTTTTATTTTTAAAATTTATTTTTGCTTGTGGGTTTCCGCTTCTGAGTTG
GTTAAACACAACAAGTATGGCGAGCTCGTCGGAGATGTCGGTTAACTTGC
CGGAGAAATCAAGTTTCTCTCAGACGTGTAGTCTTTTGAGTCAGTACTTG
AAAGAGGGAGGTAGCTTTGGAGATCTTAGCCTCGGGATATCAAGCAACAT
TGAAGCTAATGGGGTACCCGAGATCCCGCGGCGGCCAGCAGCTACAACTA
TGAATTTGTTTCCAGTAAGTGACAACTCTGGACAAGATGTTTCAGCTCGA
AACATGGCAGCTCCTCGAAACTGGGAATCAATGAATTTGTTCCCTCAACA
AGCTGGTTTTGCTCCTAAGAATGATACCCCTAACATGATAGATTCAAGTT
TAAACAAGCCCGCTCCGCAAACTGCTCAAATGACTATATTTTATGGCGGA
CAAGTGATTGTGTTCAATGATTTTCCTGCNTGATAAGCAAATGAAATCAT
GCAATTAGCAAGCCACGGGAGCTCACTGAGCCATGGGGACGTTTATCCTN
CTATGCAACTGCCGGCCCAGGGGTACAACTCTTTTGCTGGCTAGTTACCC
CAAAGTCAGTTGAATCACTCCCCGGGTTCTCTAACTTTGCCAACATCTAA
TTCCAGGACGCGCTCAACTCCCTTAAAA
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