EY753340

Overview
NameEY753340
Unique NameEY753340
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753340 vs. ExPASy Swiss-Prot
Match: CPL4_ARATH (RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 5.482e-75
Identity = 137/221 (61.99%), Postives = 169/221 (76.47%), Query Frame = 2
Query:   29 MAKLLDPSREYFNARVISRDDGTQRHQKGLDVVLGQESAVLILDDTENAWTKHRDNLMLMERYHFFASSCRQFGYHCQSLSQLRSDESELEGALASVLKVLKRIHNIFFDELANDLAGRYVRQVLKMVRGEVLKGCKLVFSHVSPTKFPADTHYLWKMAEQLGATCLIELDPSVTHVVSTDARTENSRWAAKEAKFLVDPRWIETDNFLRQRQTRRELSCE 691
            MAKLLDP  EYF  RVISRDDGT RH+K LDVVLGQESAVLILDDTENAW KH+DNL+++ERYHFF+SSCRQF +  +SLS+L+SDESE +GALA+VLKVLK+ H +FF+ +   ++ R VR +LK VR E+LKGCK+VFS V PTK   + H LWKMAE+LGATC  E+D SVTHVV+ D  TE +RWA +E K++V   WI+  N+L  +Q       E
Sbjct:  210 MAKLLDPKGEYFGDRVISRDDGTVRHEKSLDVVLGQESAVLILDDTENAWPKHKDNLIVIERYHFFSSSCRQFDHRYKSLSELKSDESEPDGALATVLKVLKQAHALFFENVDEGISNRDVRLMLKQVRKEILKGCKIVFSRVFPTKAKPEDHPLWKMAEELGATCATEVDASVTHVVAMDVGTEKARWAVREKKYVVHRGWIDAANYLWMKQPEENFGLE 430          
BLAST of EY753340 vs. ExPASy Swiss-Prot
Match: CPL3_ARATH (RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana GN=CPL3 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.842e-39
Identity = 93/221 (42.08%), Postives = 127/221 (57.47%), Query Frame = 2
Query:   29 MAKLLDPSREYFNARVISRDD------GTQRHQKGLDV--VLGQESAVLILDDTENAWTKHRDNLMLMERYHFFASSCRQFGYHCQSLSQLRSDESELEGALASVLKVLKRIHNIFFDELANDLAGRYVRQVLKMVRGEVLKGCKLVFSHVSPT-KFPADTHYLWKMAEQLGATCLIELDPSVTHVVSTDARTENSRWAAKEAKFLVDPRWIETDNFLRQR 664
            MAKLLDP    FN RVIS+ D      G +R  K  D+  V+G ES+V+I+DD+   W +H+ NL+ +ERY +F  S RQFG    SL +L  DE   EG LAS L V+++IH  FF   + D     VR +L   + ++L GC++VFS + P  +     H LW+ AEQ GA C  ++D  VTHVV+    T+   WA    +F+V P W+E   FL QR
Sbjct: 1013 MAKLLDPKGVLFNGRVISKGDDGDPLDGDERVPKSKDLEGVMGMESSVVIIDDSVRVWPQHKMNLIAVERYLYFPCSRRQFGLLGPSLLELDRDEVPEEGTLASSLAVIEKIHQNFFSHTSLDEVD--VRNILASEQRKILAGCRIVFSRIIPVGEAKPHLHPLWQTAEQFGAVCTTQVDEHVTHVVTNSLGTDKVNWALTRGRFVVHPGWVEASAFLYQR 1231          
The following BLAST results are available for this feature:
BLAST of EY753340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CPL4_ARATH5.482e-7561.99RNA polymerase II C-terminal domain phosphatase-li... [more]
CPL3_ARATH2.842e-3942.08RNA polymerase II C-terminal domain phosphatase-li... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-F09-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753340 ID=EY753340; Name=EY753340; organism=Citrus sinensis; type=EST; length=888bp
CCACGCGTCCGAGGCCTTATGCCTTATAATGGCTAAGTTGCTTGATCCCA
GCAGAGAGTACTTCAATGCTAGAGTGATTTCACGAGATGATGGCACTCAA
AGACATCAGAAGGGCCTTGATGTGGTACTGGGGCAAGAAAGTGCTGTTCT
GATTCTTGATGACACAGAAAACGCATGGACGAAGCACAGAGACAATTTGA
TGCTGATGGAAAGATATCATTTCTTTGCTTCAAGTTGTCGCCAATTTGGC
TACCACTGTCAATCTCTATCTCAGTTGAGGAGTGATGAAAGTGAGCTAGA
GGGTGCACTTGCATCTGTTCTTAAAGTTCTCAAGCGAATCCACAATATTT
TCTTCGATGAACTTGCGAACGATCTTGCTGGCAGATATGTGAGGCAGGTG
CTCAAAATGGTCCGGGGGGAAGTCTTAAAGGGGTGTAAACTTGTCTTCAG
TCATGTTTCACCAACTAAATTCCCAGCAGATACTCACTATCTATGGAAGA
TGGCGGAGCAGTTAGGAGCCACGTGCTTGATAGAACTTGATCCATCAGTG
ACACATGTGGTTTCAACAGATGCTCGAACAGAAAACTCTCGCTGGGCAGC
AAAGGAAGCTAAGTTTTTGGTGGATCCAAGGTGGATAGAGACAGACAACT
TTTTGAGGCAAAGGCAAACCCGAAGAGAACTTTCCTGTGAAACAAAACAT
ACCTTGAGAGAACTTTAATGCGAAACCAATTGAGGATCATTAACCCAAAG
TTTTATGTGGCTGCTAACCCTGCGGTGAATCTTTATGGCTGTACCAGGCG
TTAATAATTGCTGACATGGGAAATTATTCAGGAAGTTGGCCAAAACACTC
AATAAACTCACTGGATACGGGAACTGAAAGCCTATTAT
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