EY753333

Overview
NameEY753333
Unique NameEY753333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753333_ssr95 microsatellite EY753333_ssr95:95..115. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13089 contig Csv1_Contig13089:1..845. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753333 vs. ExPASy Swiss-Prot
Match: PIF1_ARATH (Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.305e-19
Identity = 66/153 (43.14%), Postives = 83/153 (54.25%), Query Frame = 3
Query:  348 MNHCVPDFEFDDDHWIPTSSVLNR-PRKSAMA---EEDVMELLWQNGPVVLHNQNQRSLK-KSQPSFPADQSAPREIPSSXXXXXXXXXXLFMQEDEMASWLHYPLNDTNFDSDFCTDLLYPAXCIXXXXXXXXTXTXT-PPVRATHVTDSRP 788
            M+H VPDF+ DDD+    +S LN  PRKS      ++D+MELLWQNG VV+ NQ   + K  S P        P++ PSS          LF+QEDEM SWLHYPL     D DFC+DLL+ A             T   PPV +T+  +SRP
Sbjct:    1 MHHFVPDFDTDDDYVNNHNSSLNHLPRKSITTMGEDDDLMELLWQNGQVVVQNQRLHTKKPSSSPPKLLPSMDPQQQPSSDQN-------LFIQEDEMTSWLHYPLR----DDDFCSDLLFSAAPTATATATVSQVTAARPPVSSTN--ESRP 140          
The following BLAST results are available for this feature:
BLAST of EY753333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PIF1_ARATH2.305e-1943.14Transcription factor PIF1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-F02-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753333 ID=EY753333; Name=EY753333; organism=Citrus sinensis; type=EST; length=845bp
ATCATCACAAAACTCATATCAGCCTTTTCTTCCTCTCCGCACATAAGAAA
GAAGAAAAGAAGGAGAATCAAATCATCATCATTTGTAATAATCATATTAT
TATTATTATTATTATTACGATTTTACAAAATCCGACTCATATCATACTTC
TTTTCTATTTATGTGGTCTGAATTTTTTAAGCTCAGTCACTTATTAGATA
TTTACTTTCTGTAGCTGTGAGTCAATTGACTCAATTCTCACATTCAGGAT
ATAATTCTTAACTATTTATTTCTGCCTTTAATGAACTCAATTTTATTTGA
TTTCTTGATCTAATGAATTTGAAACTAATAATTATATACAACAGAGGATG
AATCACTGTGTTCCGGATTTTGAGTTCGACGACGATCACTGGATCCCTAC
TTCTTCAGTTTTAAATCGCCCTAGAAAATCAGCCATGGCGGAGGAGGATG
TTATGGAGCTGCTTTGGCAAAACGGCCCAGTCGTTTTGCATAACCAGAAT
CAGAGATCCCTCAAGAAATCGCAGCCTTCGTTCCCCGCTGACCAATCAGC
TCCTAGAGAGATCCCTTCCTCACACCATCACCAGCAAGAACAACAGGATC
ACCTGTTTATGCAAGAAGATGAAATGGCTTCTTGGCTTCACTATCCCCTT
AATGACACTAATTTTGACTCTGATTTTTGCACCGATCTTCTTTATCCAGC
TNCTTGTATTACTTNCACTACCACTACAACCGNCACAGNCACAGNCACGC
CTCCCGTTCGTGCCACTCACGTGACAGACTCACGACCTCAGCTGAATACT
GCTACTACTGTTGGCTTCGCGTCCGCCTTTGAGGCCTCCGATTTC
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