EY753323

Overview
NameEY753323
Unique NameEY753323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753323_ssr12 microsatellite EY753323_ssr12:12..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6268 contig Csv1_Contig6268:42..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753323 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 1.097e-80
Identity = 142/175 (81.14%), Postives = 153/175 (87.43%), Query Frame = 1
Query:   70 ARNGIVAVDPKPKNGVTSKVIDFVEKLIVKWMYDSSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLXAKLKVLDVSYGNGTANTALVYTMG 594
            A  G+V VDPKP NG +SKVID +EKL+VK++YDSS P HYL+GNF PV  ETPPTKDL V GHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFV TSRLKQEE+FG +KFMKIGDLKGLFGLLMVN+ ML  KLKVLD+SYG GT NTALVY  G
Sbjct:   10 AEGGLVKVDPKPTNGFSSKVIDLLEKLLVKFLYDSSLPHHYLTGNFGPVT-ETPPTKDLPVKGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVETSRLKQEEYFGRSKFMKIGDLKGLFGLLMVNIHMLRTKLKVLDLSYGGGTTNTALVYHHG 183          

HSP 2 Score: 30.8018 bits (68), Expect = 1.097e-80
Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  585 YHGKLLALSEADKP 626
            +HGKLLALSEADKP
Sbjct:  181 HHGKLLALSEADKP 194          
BLAST of EY753323 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 4.142e-80
Identity = 140/171 (81.87%), Postives = 154/171 (90.06%), Query Frame = 1
Query:   76 NGIVA-VDPKPKNGVTSKVIDFVEKLIVKWMYDSSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLXAKLKVLDVSYGNGTANTALVY 585
            NG++  V+PKP NG TSK +D +EK+IVK  YDSS P H+LSGNFAPV DETPP KDL V GHLPDCLNGEFVRVGPNPKF+PVAGYHWFDGDGMIHGLRIKDGKA+YVSRFV+TSR KQEE+F G+KFMKIGDLKGLFGLLMVNMQML AKLK+LDVSYG+GTANTALVY
Sbjct:    8 NGVILEVEPKPSNGFTSKAVDLLEKIIVKLFYDSSLPHHWLSGNFAPVKDETPPVKDLTVQGHLPDCLNGEFVRVGPNPKFSPVAGYHWFDGDGMIHGLRIKDGKASYVSRFVKTSRFKQEEYFNGSKFMKIGDLKGLFGLLMVNMQMLRAKLKILDVSYGHGTANTALVY 178          

HSP 2 Score: 26.1794 bits (56), Expect = 4.142e-80
Identity = 11/14 (78.57%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  585 YHGKLLALSEADKP 626
            +H KLLALSE DKP
Sbjct:  179 HHQKLLALSEGDKP 192          
BLAST of EY753323 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 277.715 bits (709), Expect = 4.521e-76
Identity = 130/173 (75.14%), Postives = 150/173 (86.71%), Query Frame = 1
Query:   76 NGIVAVDPKPKNGVTSKVIDFVEKLIVKWMYDSSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLXAKLKVLDVSYGNGTANTALVYTMG 594
            + I++V P+P  G +SK++D +E+L+VK M+D+S PLHYLSGNFAP+ DETPP KDL V G LP+CLNGEFVRVGPNPKF  VAGYHWFDGDGMIHG+RIKDGKATYVSR+V+TSRLKQEEFFG AKFMKIGDLKG FGLLMVN+Q L  KLK+LD +YGNGTANTALVY  G
Sbjct:    9 SSIISVHPRPSKGFSSKLLDLLERLVVKLMHDASLPLHYLSGNFAPIRDETPPVKDLPVHGFLPECLNGEFVRVGPNPKFDAVAGYHWFDGDGMIHGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMKIGDLKGFFGLLMVNVQQLRTKLKILDNTYGNGTANTALVYHHG 181          

HSP 2 Score: 29.261 bits (64), Expect = 4.521e-76
Identity = 12/14 (85.71%), Postives = 13/14 (92.86%), Query Frame = 3
Query:  585 YHGKLLALSEADKP 626
            +HGKLLAL EADKP
Sbjct:  179 HHGKLLALQEADKP 192          
BLAST of EY753323 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 3.785e-75
Identity = 128/180 (71.11%), Postives = 146/180 (81.11%), Query Frame = 1
Query:   55 ENDVVARNGIVAVDPKPKNGVTSKVIDFVEKLIVKWMYDSSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLXAKLKVLDVSYGNGTANTALVYTMG 594
            + +V  R  IVAV+P+P  G+ S  +D +EK +V   +D S+P HYLSGNFAPV DETPP  DL V GHLP+CLNGEFVRVGPNPKF PVAGYHWFDGDGMIHG+RIKDGKATY SR+V+TSRLKQEE+F G KFMKIGDLKG FGL MV MQ+L AKLKV+DVSYG GT NTAL+Y  G
Sbjct:    6 KEEVEERRSIVAVNPQPSKGLVSSAVDLIEKAVVYLFHDKSKPCHYLSGNFAPVVDETPPCPDLPVRGHLPECLNGEFVRVGPNPKFMPVAGYHWFDGDGMIHGMRIKDGKATYASRYVKTSRLKQEEYFEGPKFMKIGDLKGFFGLFMVQMQLLRAKLKVIDVSYGVGTGNTALIYHHG 185          

HSP 2 Score: 30.8018 bits (68), Expect = 3.785e-75
Identity = 13/14 (92.86%), Postives = 14/14 (100.00%), Query Frame = 3
Query:  585 YHGKLLALSEADKP 626
            +HGKLLALSEADKP
Sbjct:  183 HHGKLLALSEADKP 196          
BLAST of EY753323 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.352e-26
Identity = 65/167 (38.92%), Postives = 95/167 (56.89%), Query Frame = 1
Query:  103 PKNGVTSKVIDFVEKLIV-----KWMYDSSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLXAKLKVLDVSYGNGTANTALVY 585
            P     S  +DF E  ++     K +  +  P H +SGN+APVP+++  +  L V G +PDC++G ++R G NP F PV+G+H FDGDGM+H ++I +G A+Y  RF  T RL QE+  G   F K IG+L G  G+  + +        +L+   G G AN  LVY
Sbjct:   78 PLQRAASAALDFAETALLRRERSKPLPKTVDPRHQISGNYAPVPEQSVKSS-LSVDGKIPDCIDGVYLRNGANPLFEPVSGHHLFDGDGMVHAVKITNGDASYSCRFTETERLVQEKQLGSPIFPKAIGELHGHSGIARLMLFYARGLFGLLNHKNGTGVANAGLVY 243          
BLAST of EY753323 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.753e-26
Identity = 64/160 (40.00%), Postives = 95/160 (59.38%), Query Frame = 1
Query:  130 IDFVEKLIVKWMYDSSQPLH-------YLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLXAKLKVLDVSYGNGTANTALVY 585
            +D VE  +V   ++S  PL         ++GNFAPVP+     + L V+G +P C++G +VR G NP + PVAG+H+FDGDGM+H ++  +G A+Y  RF  T RL QE+  G   F K IG+L G  G+  + +    +  +++D S+G G AN  LVY
Sbjct:  116 LDMVETALVS--HESKHPLPKTADPKVQIAGNFAPVPEHAAD-QALPVVGKIPKCIDGVYVRNGANPLYEPVAGHHFFDGDGMVHAVKFTNGAASYACRFTETQRLAQEKSLGRPVFPKAIGELHGHSGIARLLLFYARSLFQLVDGSHGMGVANAGLVY 272          
BLAST of EY753323 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.706e-25
Identity = 64/143 (44.76%), Postives = 86/143 (60.14%), Query Frame = 1
Query:  172 SSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKA-TYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLXAKLKVLDVSYGNGTANTALVYTMG 594
            ++ P   ++GNFAPV  E PP  +L V G +P  ++G + R G NP F PVAG+H FDGDGM+H LRI++G A +Y  RF  T+RL+QE   G   F K IG+L G  G+  + +    A   ++D S G G AN  LVY  G
Sbjct:  116 TADPAVQIAGNFAPV-GERPPVHELPVSGRIPPFIDGVYARNGANPCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNG 257          
BLAST of EY753323 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.840e-25
Identity = 59/142 (41.55%), Postives = 86/142 (60.56%), Query Frame = 1
Query:  172 SSQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLXAKLKVLDVSYGNGTANTALVYTMG 594
            ++ P   ++GNFAPV +E P  ++L V+G LPD + G +VR G NP   PV G+H+FDGDGM+H ++ + G A+Y  RF +T+R  QE   G   F K IG+L G  G+  + +    A   ++D ++G G AN  LVY  G
Sbjct:  116 TADPSVQIAGNFAPV-NEQPVRRNLPVVGKLPDSIKGVYVRNGANPLHEPVTGHHFFDGDGMVHAVKFEHGSASYACRFTQTNRFVQERQLGRPVFPKAIGELHGHTGIARLMLFYARAAAGIVDPAHGTGVANAGLVYFNG 256          
BLAST of EY753323 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.402e-24
Identity = 61/158 (38.61%), Postives = 92/158 (58.23%), Query Frame = 1
Query:  130 IDFVEKLIVKWMYDS-----SQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLXAKLKVLDVSYGNGTANTALVY 585
            ID  E+ ++    DS     + P   ++GN++PVP E+   ++L V G +PDC++G ++R G NP F P AG+H FDGDGM+H ++I +G A+Y  RF +T RL QE+  G   F K IG+L G  G+  + +        +++   G G AN  LVY
Sbjct:   80 IDAAERALISHEQDSPLPKTADPRVQIAGNYSPVP-ESSVRRNLTVEGTIPDCIDGVYIRNGANPMFEPTAGHHLFDGDGMVHAVKITNGSASYACRFTKTERLVQEKRLGRPVFPKAIGELHGHSGIARLMLFYARGLCGLINNQNGVGVANAGLVY 236          
BLAST of EY753323 vs. ExPASy Swiss-Prot
Match: NCED6_ARATH (9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 9.128e-24
Identity = 66/168 (39.29%), Postives = 96/168 (57.14%), Query Frame = 1
Query:  115 VTSKVIDFVEKLIVKWMYDS------SQPLHYLSGNFAPVPDETPPTKDLHVIGHLPDCLNGEFVRVGPNPKFAPVAGYHWFDGDGMIHGLRIK-DGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLXAKLKVLDVSYGNGTANTALVYTMG 594
            + + ++D +E  IV  M  +      + P   LSGNFAPV +E P    L V+G +P CL G ++R G NP F P+AG+H FDGDGMIH + I  D + +Y  R+ +T+RL QE   G + F K IG+L G  GL  + +    A + ++D + G G AN  +V+  G
Sbjct:   69 LAATMLDKIESSIVIPMEQNRPLPKPTDPAVQLSGNFAPV-NECPVQNGLEVVGQIPSCLKGVYIRNGANPMFPPLAGHHLFDGDGMIHAVSIGFDNQVSYSCRYTKTNRLVQETALGRSVFPKPIGELHGHSGLARLALFTARAGIGLVDGTRGMGVANAGVVFFNG 235          
The following BLAST results are available for this feature:
BLAST of EY753323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CCD1_PHAVU1.097e-8081.14Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_PEA4.142e-8081.87Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_ARATH4.521e-7675.14Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD_CROSA3.785e-7571.11Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
NCED5_ARATH3.352e-2638.92Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED1_PHAVU9.753e-2640.009-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]
NCED1_MAIZE3.706e-2544.769-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
NCED3_ARATH4.840e-2541.559-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED2_ARATH2.402e-2438.619-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]
NCED6_ARATH9.128e-2439.299-cis-epoxycarotenoid dioxygenase NCED6, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-001-D12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753323 ID=EY753323; Name=EY753323; organism=Citrus sinensis; type=EST; length=626bp
CCACGCGTCCGGAGAGAGAGAGAGAGAGAGAGTCATGGTGGAGAAAGAAA
ACTGGAGAACGACGTCGTAGCACGAAATGGAATAGTGGCGGTGGATCCGA
AACCGAAGAATGGAGTGACTTCGAAAGTGATAGACTTTGTGGAGAAACTG
ATAGTGAAGTGGATGTACGATTCTTCACAGCCTCTTCATTATCTCTCCGG
TAACTTCGCTCCAGTTCCTGACGAGACTCCTCCTACTAAAGACCTCCACG
TCATCGGCCATCTCCCCGATTGCTTGAATGGGGAGTTTGTCAGGGTTGGT
CCTAATCCCAAGTTTGCCCCTGTGGCCGGATACCACTGGTTTGATGGAGA
TGGCATGATTCATGGTCTGCGCATCAAAGACGGAAAGGCTACATATGTCT
CCCGTTTTGTGAGGACTTCACGTCTTAAACAGGAAGAATTTTTCGGAGGT
GCTAAATTTATGAAGATTGGAGACCTTAAGGGGCTATTTGGATTACTCAT
GGTTAACATGCAAATGCTTANAGCAAAGTTGAAAGTACTGGATGTTTCAT
ATGGAAATGGGACAGCTAATACAGCTCTTGTATATACCATGGGAAACTTC
TAGCGCTCTCAGAGGCGGACAAACCA
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