GE213160
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 9.592e-30 Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 1 Query: 10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 + ++YHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPPVWKYESTTASTLVA Sbjct: 84 IPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 9.592e-30 Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 1 Query: 10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 + ++YHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPPVWKYESTTASTLVA Sbjct: 84 IPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 2.137e-29 Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 1 Query: 10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 + ++YHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPPVWKYESTTASTLVA Sbjct: 84 IPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_PEA (40S ribosomal protein S13 OS=Pisum sativum GN=RPS13 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 2.363e-28 Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 1 Query: 10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 + ++YHLIKKAV+IRKHLER RKDKDSKFRLILVESRIHRLARYYK+TKKLPPVWKYESTTASTLVA Sbjct: 84 IPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_MAIZE (40S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 4.030e-28 Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 1 Query: 10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 + ++Y LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK TKKLPP WKYESTTASTLVA Sbjct: 84 IPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS132_ORYSJ (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica GN=Os08g0117300 PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 4.030e-28 Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 1 Query: 10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 + ++Y LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK TKKLPP WKYESTTASTLVA Sbjct: 84 IPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS131_ORYSJ (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica GN=Os08g0117200 PE=2 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 4.030e-28 Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 1 Query: 10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 + ++Y LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK TKKLPP WKYESTTASTLVA Sbjct: 84 IPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_LUMRU (40S ribosomal protein S13 OS=Lumbricus rubellus GN=RPS13 PE=2 SV=3) HSP 1 Score: 115.546 bits (288), Expect = 8.403e-26 Identity = 57/68 (83.82%), Postives = 60/68 (88.24%), Query Frame = 1 Query: 10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 + ++Y LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK K LPPVWKYES TAS LVA Sbjct: 84 IPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKTRKVLPPVWKYESATASALVA 151
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_XENLA (40S ribosomal protein S13 OS=Xenopus laevis GN=rps13 PE=3 SV=2) HSP 1 Score: 113.235 bits (282), Expect = 4.170e-25 Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 1 Query: 19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 ++YHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK + LPP WKYES+TAS LVA Sbjct: 87 DLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTRRVLPPNWKYESSTASALVA 151
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_RAT (40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=2 SV=2) HSP 1 Score: 113.235 bits (282), Expect = 4.170e-25 Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 1 Query: 19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213 ++YHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK + LPP WKYES+TAS LVA Sbjct: 87 DLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151 The following BLAST results are available for this feature:
BLAST of GE213160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 41
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Sequences
The
following sequences are available for this feature:
EST sequence >GE213160 ID=GE213160; Name=GE213160; organism=Citrus sinensis; type=EST; length=256bpback to top |