GE213160

Overview
NameGE213160
Unique NameGE213160
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length256
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3500 contig Csv1_Contig3500:315..570. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS132_ARATH (40S ribosomal protein S13-2 OS=Arabidopsis thaliana GN=RPS13B PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.592e-30
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            +  ++YHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPPVWKYESTTASTLVA
Sbjct:   84 IPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS131_ARATH (40S ribosomal protein S13-1 OS=Arabidopsis thaliana GN=RPS13A PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.592e-30
Identity = 62/68 (91.18%), Postives = 66/68 (97.06%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            +  ++YHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPPVWKYESTTASTLVA
Sbjct:   84 IPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_SOYBN (40S ribosomal protein S13 OS=Glycine max GN=RPS13 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.137e-29
Identity = 61/68 (89.71%), Postives = 66/68 (97.06%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            +  ++YHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPPVWKYESTTASTLVA
Sbjct:   84 IPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_PEA (40S ribosomal protein S13 OS=Pisum sativum GN=RPS13 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.363e-28
Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            +  ++YHLIKKAV+IRKHLER RKDKDSKFRLILVESRIHRLARYYK+TKKLPPVWKYESTTASTLVA
Sbjct:   84 IPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_MAIZE (40S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.030e-28
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            +  ++Y LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK TKKLPP WKYESTTASTLVA
Sbjct:   84 IPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS132_ORYSJ (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.030e-28
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            +  ++Y LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK TKKLPP WKYESTTASTLVA
Sbjct:   84 IPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS131_ORYSJ (40S ribosomal protein S13-1 OS=Oryza sativa subsp. japonica GN=Os08g0117200 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 4.030e-28
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            +  ++Y LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK TKKLPP WKYESTTASTLVA
Sbjct:   84 IPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKRTKKLPPTWKYESTTASTLVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_LUMRU (40S ribosomal protein S13 OS=Lumbricus rubellus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 8.403e-26
Identity = 57/68 (83.82%), Postives = 60/68 (88.24%), Query Frame = 1
Query:   10 VAAEVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            +  ++Y LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK  K LPPVWKYES TAS LVA
Sbjct:   84 IPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKTRKVLPPVWKYESATASALVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_XENLA (40S ribosomal protein S13 OS=Xenopus laevis GN=rps13 PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.170e-25
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 1
Query:   19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            ++YHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   87 DLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTRRVLPPNWKYESSTASALVA 151          
BLAST of GE213160 vs. ExPASy Swiss-Prot
Match: RS13_RAT (40S ribosomal protein S13 OS=Rattus norvegicus GN=Rps13 PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.170e-25
Identity = 53/65 (81.54%), Postives = 60/65 (92.31%), Query Frame = 1
Query:   19 EVYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKETKKLPPVWKYESTTASTLVA 213
            ++YHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+TAS LVA
Sbjct:   87 DLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA 151          
The following BLAST results are available for this feature:
BLAST of GE213160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RS132_ARATH9.592e-3091.1840S ribosomal protein S13-2 OS=Arabidopsis thalian... [more]
RS131_ARATH9.592e-3091.1840S ribosomal protein S13-1 OS=Arabidopsis thalian... [more]
RS13_SOYBN2.137e-2989.7140S ribosomal protein S13 OS=Glycine max GN=RPS13 ... [more]
RS13_PEA2.363e-2888.2440S ribosomal protein S13 OS=Pisum sativum GN=RPS1... [more]
RS13_MAIZE4.030e-2888.2440S ribosomal protein S13 OS=Zea mays GN=RPS13 PE=... [more]
RS132_ORYSJ4.030e-2888.2440S ribosomal protein S13-2 OS=Oryza sativa subsp.... [more]
RS131_ORYSJ4.030e-2888.2440S ribosomal protein S13-1 OS=Oryza sativa subsp.... [more]
RS13_LUMRU8.403e-2683.8240S ribosomal protein S13 OS=Lumbricus rubellus GN... [more]
RS13_XENLA4.170e-2581.5440S ribosomal protein S13 OS=Xenopus laevis GN=rps... [more]
RS13_RAT4.170e-2581.5440S ribosomal protein S13 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC23 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213160 ID=GE213160; Name=GE213160; organism=Citrus sinensis; type=EST; length=256bp
ATTAGCGTGGTCGCGGCCGAGGTGTACCACCTCATCAAGAAAGCAGTCGC
TATTAGGAAGCATCTAGAGAGGAACAGGAAGGATAAAGATTCCAAGTTTA
GGTTGATCTTGGTTGAGAGCAGAATCCACCGACTGGCTCGCTACTACAAG
GAGACAAAGAAGCTTCCACCTGTATGGAAATATGAGTCAACCACTGCCAG
CACTCTCGTGGCATAGGTGAGATATATTTGGTACCTGCCCGGGCGGCCGC
TCGAAA
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