GE213158

Overview
NameGE213158
Unique NameGE213158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10309 contig Csv1_Contig10309:1..545. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GE213158 vs. ExPASy Swiss-Prot
Match: FHIT_DICDI (Bis(5'-adenosyl)-triphosphatase OS=Dictyostelium discoideum GN=fhit PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.577e-31
Identity = 68/141 (48.23%), Postives = 92/141 (65.25%), Query Frame = -2
Query:   18 FGPFKIDPRQVFYSTPLSYALVNLRPLLPGHVLVCPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAASSEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYLP 440
            FGP+ I   ++F++T LS+ALVNL+P+LPGHVLVCP+R   R  DLT +E  DLWL+AQ + + +E +     + FAIQDG  AGQTV HVHIHI+PRK    E ND   +  EK++       + R+ EEM +E+ E  P
Sbjct:    6 FGPWLIRQSEIFFTTELSFALVNLKPVLPGHVLVCPKRIVPRVKDLTKEEFTDLWLSAQRISSVVEEHFNGDGITFAIQDGKNAGQTVEHVHIHIIPRKKFDFENNDQIYNEIEKER-------EPRSYEEMEKESSELRP 139          
BLAST of GE213158 vs. ExPASy Swiss-Prot
Match: FHIT_BOVIN (Bis(5'-adenosyl)-triphosphatase OS=Bos taurus GN=FHIT PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.690e-31
Identity = 70/139 (50.36%), Postives = 90/139 (64.75%), Query Frame = -2
Query:   33 YAFGPFKIDPRQVFYSTPLSYALVNLRPLLPGHVLVCPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAASSEENDGNKDVKEK-QKLDLDIQMKNRTMEEMAQEA 446
            + FG   I P  VF  T LS+ALVN +P++PGHVLVCP R   RF D++ +E  DL+  AQ VGT +E + + +SL F++QDGP+AGQTV HVH+HI+PRKA     ND   D  EK  + D D     R+ EEMA EA
Sbjct:    3 FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFRDMSPEEVADLFQAAQRVGTVVEKHFQGTSLTFSMQDGPEAGQTVKHVHVHILPRKAGDFHRNDSIYDALEKHDREDKDSPALWRSEEEMAAEA 141          
BLAST of GE213158 vs. ExPASy Swiss-Prot
Match: FHIT_HUMAN (Bis(5'-adenosyl)-triphosphatase OS=Homo sapiens GN=FHIT PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 1.744e-30
Identity = 68/138 (49.28%), Postives = 87/138 (63.04%), Query Frame = -2
Query:   33 YAFGPFKIDPRQVFYSTPLSYALVNLRPLLPGHVLVCPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAASSEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEA 446
            + FG   I P  VF  T LS+ALVN +P++PGHVLVCP R   RF DL  DE  DL+ T Q VGT +E +   +SL F++QDGP+AGQTV HVH+H++PRKA     ND   +  +K   + D     R+ EEMA EA
Sbjct:    3 FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQTTQRVGTVVEKHFHGTSLTFSMQDGPEAGQTVKHVHVHVLPRKAGDFHRNDSIYEELQKHDKE-DFPASWRSEEEMAAEA 139          
BLAST of GE213158 vs. ExPASy Swiss-Prot
Match: FHIT_RAT (Bis(5'-adenosyl)-triphosphatase OS=Rattus norvegicus GN=Fhit PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.518e-29
Identity = 66/140 (47.14%), Postives = 89/140 (63.57%), Query Frame = -2
Query:   30 YAFGPFKIDPRQVFYSTPLSYALVNLRPLLPGHVLVCPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAASSEENDGNKDVKEK-QKLDLDIQMKNRTMEEMAQEAD 446
            + FG   I P  VF  T LS+ALVN +P++PGHVL+CP R   RF DL  DE  DL+   Q VGT +E + + +S+ F++QDGP+AGQTV HVH+HI+PRK+     ND   D  +K  + + D     R+ EEMA EA+
Sbjct:    3 FKFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLMCPLRPVERFRDLRPDEVADLFQVTQRVGTVVEKHFQGTSITFSMQDGPEAGQTVKHVHVHILPRKSGDFRRNDNIYDELQKHDREEEDSPAFWRSEEEMAAEAE 142          
BLAST of GE213158 vs. ExPASy Swiss-Prot
Match: FHIT_MOUSE (Bis(5'-adenosyl)-triphosphatase OS=Mus musculus GN=Fhit PE=2 SV=3)

HSP 1 Score: 127.872 bits (320), Expect = 3.288e-29
Identity = 66/140 (47.14%), Postives = 89/140 (63.57%), Query Frame = -2
Query:   30 YAFGPFKIDPRQVFYSTPLSYALVNLRPLLPGHVLVCPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAASSEENDGNKDVKEK-QKLDLDIQMKNRTMEEMAQEAD 446
            + FG   I P  VF  T LS+ALVN +P++PGHVLVCP R   RF DL  DE  DL+   Q VGT +E + + +S+ F++QDGP+AGQTV HVH+H++PRKA     ND   D  +K  + + D     R+ +EMA EA+
Sbjct:    3 FRFGQHLIKPSVVFLKTELSFALVNRKPVVPGHVLVCPLRPVERFRDLHPDEVADLFQVTQRVGTVVEKHFQGTSITFSMQDGPEAGQTVKHVHVHVLPRKAGDFPRNDNIYDELQKHDREEEDSPAFWRSEKEMAAEAE 142          
BLAST of GE213158 vs. ExPASy Swiss-Prot
Match: NFT1_CAEEL (Nitrilase and fragile histidine triad fusion protein NitFhit OS=Caenorhabditis elegans GN=nft-1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.356e-27
Identity = 65/153 (42.48%), Postives = 89/153 (58.17%), Query Frame = -2
Query:   24 LFLSPKMSSIEQYAFGPFKIDPRQVFYSTPLSYALVNLRPLLPGHVLVCPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAASSEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEY 482
            L ++ K S      F  F I    +FYSTP S+  VNL+P+  GHVLV P+R   R  DLT  ET DL++ A+ V   LE +H  +S    +QDG  AGQTVPHVHIHI+PR+A    +N+  + +    K   + + K R+ E+MA+EA  Y
Sbjct:  287 LHINEKSSETGGLKFARFNIPADHIFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLFIVAKKVQAMLEKHHNVTSTTICVQDGKDAGQTVPHVHIHILPRRAGDFGDNEIYQKLASHDK---EPERKPRSNEQMAEEAVVY 436          
BLAST of GE213158 vs. ExPASy Swiss-Prot
Match: APH1_SCHPO (Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] OS=Schizosaccharomyces pombe GN=aph1 PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 2.439e-24
Identity = 71/173 (41.04%), Postives = 90/173 (52.02%), Query Frame = -2
Query:   15 EQYAFGPFKIDPRQVFYSTPLSYALVNLRPLLPGHVLVCPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAASSEEND-------------------GNK--------DVKEKQKLDLDIQMKNRTMEEMAQEADEYLPG 452
            +Q  F  F +   QVFY T LS A VNL+P+LPGHVLV P+R   R  DLT  E  DL+ + + V   +E    AS+    IQDG  AGQTVPHVH+HI+PRK A   END                   GN+            +Q +  D   K RT+EEM +EA ++L G
Sbjct:    3 KQLYFSKFPVGS-QVFYRTKLSAAFVNLKPILPGHVLVIPQRAVPRLKDLTPSELTDLFTSVRKVQQVIEKVFSASASNIGIQDGVDAGQTVPHVHVHIIPRKKADFSENDLVYSELEKNEGNLASLYLTGNERYAGDERPPTSMRQAIPKDEDRKPRTLEEMEKEA-QWLKG 173          
BLAST of GE213158 vs. ExPASy Swiss-Prot
Match: HNT2_YEAST (Hit family protein 2 OS=Saccharomyces cerevisiae GN=HNT2 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.790e-20
Identity = 56/132 (42.42%), Postives = 80/132 (60.61%), Query Frame = -2
Query:   21 QVFYSTPLSYALVNLRPLLPGHVLVCPRRDAV-RFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAASSEENDGNKDVKEKQKLDLDIQMKNRTMEEMAQEADEYL 413
            QVFY +  +YALVNL+P++PGHVL+ P R  V    DLT  E++D + T Q +   ++  +KA S+  AIQDGP+AGQ+VPH+H HI+PR     + N+    + +K    LD    N T+ +     DEYL
Sbjct:   15 QVFYKSKYTYALVNLKPIVPGHVLIVPLRTTVLNLSDLTMPESQDYFKTLQLIHRFIKWQYKADSINVAIQDGPEAGQSVPHLHTHIIPR----YKINNVGDLIYDK----LDHWDGNGTLTDWQGRRDEYL 138          
BLAST of GE213158 vs. ExPASy Swiss-Prot
Match: NFT1_DROME (Nitrilase and fragile histidine triad fusion protein NitFhit OS=Drosophila melanogaster GN=NitFhit PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.211e-17
Identity = 53/135 (39.26%), Postives = 72/135 (53.33%), Query Frame = -2
Query:   24 IDPRQVFYSTPLSYALVNLRPLLPGHVLVCPRRDAVRFGDLTADETRDLWLTAQTVGTQLESYHKASSLAFAIQDGPQAGQTVPHVHIHIVPRKAASSEENDGNKDVKEKQKLDLDIQMK-NRTMEEMAQEADEY 425
            +D R +FY +   +A  NLR ++ GHVLV  +R   R   L   E  D++ T   V   LE  ++ +S    +QDG QAGQTVPHVH HI+PR+      ND     +   KLD   + K  RT+EE  +EA  Y
Sbjct:  323 VDKRTIFYESEHCFAFTNLRCVVKGHVLVSTKRVTPRLCGLDCAEMADMFTTVCLVQRLLEKIYQTTSATVTVQDGAQAGQTVPHVHFHIMPRRLGDFGHND-----QIYVKLDERAEEKPPRTIEERIEEAQIY 452          
The following BLAST results are available for this feature:
BLAST of GE213158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
FHIT_DICDI1.577e-3148.23Bis(5'-adenosyl)-triphosphatase OS=Dictyostelium d... [more]
FHIT_BOVIN2.690e-3150.36Bis(5'-adenosyl)-triphosphatase OS=Bos taurus GN=F... [more]
FHIT_HUMAN1.744e-3049.28Bis(5'-adenosyl)-triphosphatase OS=Homo sapiens GN... [more]
FHIT_RAT2.518e-2947.14Bis(5'-adenosyl)-triphosphatase OS=Rattus norvegic... [more]
FHIT_MOUSE3.288e-2947.14Bis(5'-adenosyl)-triphosphatase OS=Mus musculus GN... [more]
NFT1_CAEEL2.356e-2742.48Nitrilase and fragile histidine triad fusion prote... [more]
APH1_SCHPO2.439e-2441.04Bis(5'-nucleosyl)-tetraphosphatase [asymmetrical] ... [more]
HNT2_YEAST2.790e-2042.42Hit family protein 2 OS=Saccharomyces cerevisiae G... [more]
NFT1_DROME2.211e-1739.26Nitrilase and fragile histidine triad fusion prote... [more]
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Properties
Property NameValue
Genbank descriptionC21 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213158 ID=GE213158; Name=GE213158; organism=Citrus sinensis; type=EST; length=555bp
ATTTCGAGCGGCCGCCCGGGCAGGTACTCATCAGCCTCTTGAGCCATCTC
CTCCATGGTCCTGTTCTTCATTTGAATATCTAAATCAAGCTTCTGCTTCT
CCTTCACATCTTTATTCCCATCATTTTCCTCAGAGCTGGCAGCTTTGCGT
GGGACAATATGGATGTGAACATGGGGCACTGTCTGTCCAGCTTGAGGTCC
ATCTTGAATGGCAAATGCTAGTGATGAAGCCTTGTGGTAGCTTTCGAGCT
GTGTGCCAACCGTCTGGGCCGTGAGCCATAAATCACGGGTCTCATCAGCA
GTAAGATCACCAAAGCGAACCGCGTCACGCCTTGGGCAGACAAGCACATG
ACCAGGAAGCAGAGGGCGCAAGTTGACCAAGGCGTAGGATAGAGGGGTTG
AATAGAACACTTGCCTAGGATCTATCTTAAAAGGGCCGAACGCATATTGC
TCGATGGATGACATCTTTGGCGACAGAAACAGTGGAGGAGGTGATCGACC
TGTTCGATGAATGGGAAATGAACCAACAGCTGCACCTCGGCCGCGACCAC
GCTAA
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