GE213155

Overview
NameGE213155
Unique NameGE213155
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length236
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:137..372. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 9.141e-33
Identity = 63/67 (94.03%), Postives = 67/67 (100.00%), Query Frame = -1 
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRT 221
            +AGTIRKNGYIVIK+RPCKV+EVSTSKTGKHGHAKCHFVGIDIF+GKKLEDIVPSSHNCDVPHVNRT
Sbjct:   23 QAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRT 89
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.141e-33
Identity = 64/67 (95.52%), Postives = 66/67 (98.51%), Query Frame = -1 
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRT 221
            +AGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRT
Sbjct:   23 QAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRT 89
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.660e-32
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = -1 
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRT 221
            +AGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRT
Sbjct:   23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRT 89
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.660e-32
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = -1 
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRT 221
            +AGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRT
Sbjct:   23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRT 89
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.660e-32
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = -1 
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRT 221
            +AGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRT
Sbjct:   23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRT 89
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.738e-32
Identity = 62/67 (92.54%), Postives = 66/67 (98.51%), Query Frame = -1 
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRT 221
            +AGTIRKNG+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRT
Sbjct:   23 QAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRT 89
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.738e-32
Identity = 62/67 (92.54%), Postives = 66/67 (98.51%), Query Frame = -1 
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRT 221
            +AGTIRKNG+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRT
Sbjct:   23 QAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRT 89
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A_MAIZE (Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.011e-31
Identity = 60/67 (89.55%), Postives = 66/67 (98.51%), Query Frame = -1 
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRT 221
            +AGT+RKNG+IVIK+RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCD+PHVNRT
Sbjct:   24 QAGTVRKNGFIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDIPHVNRT 90
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.011e-31
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = -1 
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRT 221
            +AGTIRK+GYIVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRT
Sbjct:   23 QAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRT 89
[Close]
BLAST of GE213155 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.011e-31
Identity = 62/67 (92.54%), Postives = 65/67 (97.01%), Query Frame = -1 
Query:   21 RAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRT 221
            +AGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRT
Sbjct:   23 QAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRT 89
The following BLAST results are available for this feature:
BLAST of GE213155 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
IF5A_MANES9.141e-3394.03Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A2_MEDSA9.141e-3395.52Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A3_SOLTU2.660e-3294.03Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A3_SOLLC2.660e-3294.03Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A2_SOLLC2.660e-3294.03Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A1_TOBAC7.738e-3292.54Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_NICPL7.738e-3292.54Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A_MAIZE1.011e-3189.55Eukaryotic translation initiation factor 5A OS=Zea... [more]
IF5A4_SOLTU1.011e-3192.54Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A2_NICPL1.011e-3192.54Eukaryotic translation initiation factor 5A-2 OS=N... [more]

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Properties
Property NameValue
Genbank descriptionC18 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213155 ID=GE213155; Name=GE213155; organism=Citrus sinensis; type=EST; length=236bp
ATTAGCGTGGTCGCGGCCGAGGTACGGTTGACATGGGGAACATCACAGTT
ATGAGAAGAGGGGACAATATCTTCCAGCTTCTTTCCACTGAAGATATCAA
TTCCAACAAAGTGGCACTTAGCATGACCGTGCTTTCCAGTCTTGGAGGTG
GAGACTTCCACAACCTTGCAGGGACGGCTTTTGATGACGATGTAGCCGTT
CTTACGGATGGTACCTGCCCGGGCGGCCGCTCGAAA
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