GE213149

Overview
NameGE213149
Unique NameGE213149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length331
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11531 contig Csv1_Contig11531:22..352. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 6.993e-41
Identity = 79/85 (92.94%), Postives = 83/85 (97.65%), Query Frame = -3 
Query:   24 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRY 278
            MV+V FYRNYGKTFKKPRRPYEKERLDAEL+LVGEYGLRCKRELWRVQY LSRIRNAAR+LLTLDEKNPRRIFEGEALLRRM+RY
Sbjct:    1 MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLRRMNRY 85
[Close]
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.548e-39
Identity = 76/85 (89.41%), Postives = 82/85 (96.47%), Query Frame = -3 
Query:   24 MVHVSFYRNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRY 278
            MVHV +YRNYGKTFK PRRPYEKERLD+EL+LVGEYGLR KRELWRVQY+LSRIRNAARDLLTLDEK+PRRIFEGEALLRRM+RY
Sbjct:    1 MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLRRMNRY 85
[Close]
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS9_DICDI (40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.184e-26
Identity = 53/76 (69.74%), Postives = 67/76 (88.16%), Query Frame = -3 
Query:   27 NYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHR 254
            NY KT   PRRP+EKER+DAEL++VGE+GL+ K E+WRVQYAL++IR AAR+LL LDEK+P+RIFEG ALLRR+H+
Sbjct:    4 NYSKTSHTPRRPFEKERIDAELKVVGEFGLKNKNEVWRVQYALAKIRKAARELLVLDEKDPKRIFEGSALLRRLHK 79
[Close]
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS9_PODAN (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.565e-24
Identity = 53/77 (68.83%), Postives = 65/77 (84.42%), Query Frame = -3 
Query:   27 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHR 257
            R+Y KT K PRRP+E  RLD+EL+LVGEYGLR KRE+WRV   LS+IR AAR+LLTLDEK+P+R+FEG AL+RR+ R
Sbjct:    4 RSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEKDPKRLFEGNALIRRLVR 80
[Close]
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS9_RAT (40S ribosomal protein S9 OS=Rattus norvegicus GN=Rps9 PE=1 SV=4)

HSP 1 Score: 110.923 bits (276), Expect = 2.044e-24
Identity = 51/73 (69.86%), Postives = 64/73 (87.67%), Query Frame = -3 
Query:   27 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHR 245
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVR 83
[Close]
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS9_PIG (40S ribosomal protein S9 (Fragment) OS=Sus scrofa GN=RPS9 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.044e-24
Identity = 51/73 (69.86%), Postives = 64/73 (87.67%), Query Frame = -3 
Query:   27 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHR 245
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R
Sbjct:    9 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVR 81
[Close]
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS9_PAPAN (40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.044e-24
Identity = 51/73 (69.86%), Postives = 64/73 (87.67%), Query Frame = -3 
Query:   27 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHR 245
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVR 83
[Close]
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS9_MOUSE (40S ribosomal protein S9 OS=Mus musculus GN=Rps9 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 2.044e-24
Identity = 51/73 (69.86%), Postives = 64/73 (87.67%), Query Frame = -3 
Query:   27 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHR 245
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVR 83
[Close]
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS9_HUMAN (40S ribosomal protein S9 OS=Homo sapiens GN=RPS9 PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 2.044e-24
Identity = 51/73 (69.86%), Postives = 64/73 (87.67%), Query Frame = -3 
Query:   27 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHR 245
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVR 83
[Close]
BLAST of GE213149 vs. ExPASy Swiss-Prot
Match: RS9_BOVIN (40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.044e-24
Identity = 51/73 (69.86%), Postives = 64/73 (87.67%), Query Frame = -3 
Query:   27 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHR 245
            KT+  PRRP+EK RLD EL+L+GEYGLR KRE+WRV++ L++IR AAR+LLTLDEK+PRR+FEG ALLRR+ R
Sbjct:   11 KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVR 83
The following BLAST results are available for this feature:
BLAST of GE213149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS92_ARATH6.993e-4192.9440S ribosomal protein S9-2 OS=Arabidopsis thaliana... [more]
RS91_ARATH8.548e-3989.4140S ribosomal protein S9-1 OS=Arabidopsis thaliana... [more]
RS9_DICDI2.184e-2669.7440S ribosomal protein S9 OS=Dictyostelium discoide... [more]
RS9_PODAN1.565e-2468.8340S ribosomal protein S9 OS=Podospora anserina GN=... [more]
RS9_RAT2.044e-2469.8640S ribosomal protein S9 OS=Rattus norvegicus GN=R... [more]
RS9_PIG2.044e-2469.8640S ribosomal protein S9 (Fragment) OS=Sus scrofa ... [more]
RS9_PAPAN2.044e-2469.8640S ribosomal protein S9 OS=Papio anubis GN=RPS9 P... [more]
RS9_MOUSE2.044e-2469.8640S ribosomal protein S9 OS=Mus musculus GN=Rps9 P... [more]
RS9_HUMAN2.044e-2469.8640S ribosomal protein S9 OS=Homo sapiens GN=RPS9 P... [more]
RS9_BOVIN2.044e-2469.8640S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC12 BH (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GE213149 ID=GE213149; Name=GE213149; organism=Citrus sinensis; type=EST; length=331bp
ATTTCGAGGGGCCGCCCGGACAGGTACCTGTGCATCCTCCTGAGAAGAGC
CTCACCCTCGAAAATACGACGTGGGTTCTTCTCATCGAGAGTGAGAAGAT
CCCTCGCAGCATTTCGGATGCGGCTCAGTGCATATTGAACCCTCCAGAGT
TCCCTCTTGCAACGAAGCCCATACTCTCCCACAAGTCTCAACTCAGCATC
CAATCGCTCCTTCTCATAGGGACGTCTTGGCTTCTTGAAGGTTTTCCCAT
AGTTGCGGTAGAATGAAACGTGCACCATCTTTGCGCGCCGCTGGTGCTAC
CCTCACTCACCTGCCCGGGCGGCCGCTCGAA
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