FK826741

Overview
NameFK826741
Unique NameFK826741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2745 contig Csv1_Contig2745:338..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826741 vs. ExPASy Swiss-Prot
Match: VSR7_ARATH (Vacuolar-sorting receptor 7 OS=Arabidopsis thaliana GN=VSR7 PE=2 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 1.991e-59
Identity = 98/161 (60.87%), Postives = 118/161 (73.29%), Query Frame = 3
Query:    6 SCQAYGPARCSINNGGCWSDTKNGLTFSACSESQITGCHCPKGFRGDGHKCEDINECKERSACQCDGCSCQNTWGGFECKCKGNLLFIKEQDACIERNGSRFGWFFTXXXXXXXXXXXXXXXXXXKYRLRSYMDSEIMAIMSQYMPLDNNHNNDVPNEAQP 488
            SC  YGPARC++NNGGCWSDT+NGLTFSACS+S  TGC CP+GF+GDG  CEDINECKERS CQC GC C+N+WGG++C C G+ L+I +QD CIER GS+  W+ T                  KYR RSYMDSEIM IMSQYMPL++    +VP+EA+P
Sbjct:  462 SCTPYGPARCTMNNGGCWSDTRNGLTFSACSDSVSTGCKCPEGFQGDGLTCEDINECKERSVCQCSGCRCKNSWGGYKCSCSGDRLYINDQDTCIERYGSKTAWWLTFLILAIVAVAGLAGYIFYKYRFRSYMDSEIMTIMSQYMPLESQRAREVPSEAEP 622          
BLAST of FK826741 vs. ExPASy Swiss-Prot
Match: VSR6_ARATH (Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 1.477e-54
Identity = 96/154 (62.34%), Postives = 109/154 (70.78%), Query Frame = 3
Query:    6 SCQAYGPARCSINNGGCWSDTKNGLTFSACSESQITGCHCPKGFRGDGHKCEDINECKERSACQCDGCSCQNTWGGFECKCKGNLLFIKEQDACIERNGSRFGWFFTXXXXXXXXXXXXXXXXXXKYRLRSYMDSEIMAIMSQYMPLDNNHNND 467
            SC+ YGPARCSIN GGCWS+TK GLTFSACS  + +GC CP GF+GDG KCE         ACQCDGC+C+N WGGFECKC GN L++KEQD CIER+GSR GWF T                  KYRLRSYMDSEIMAIMSQYMPL++ +  D
Sbjct:  461 SCEPYGPARCSINQGGCWSETKKGLTFSACSNLETSGCRCPPGFKGDGLKCE---------ACQCDGCNCKNKWGGFECKCSGNRLYMKEQDTCIERSGSRIGWFPTFVILAAVASICVGGYVFYKYRLRSYMDSEIMAIMSQYMPLESQNTTD 605          
BLAST of FK826741 vs. ExPASy Swiss-Prot
Match: VSR5_ARATH (Vacuolar-sorting receptor 5 OS=Arabidopsis thaliana GN=VSR5 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.382e-52
Identity = 90/154 (58.44%), Postives = 113/154 (73.38%), Query Frame = 3
Query:    6 SCQAYGPARCSINNGGCWSDTKNGLTFSACSESQITGCHCPKGFRGDGHKCEDINECKERSACQCDGCSCQNTWGGFECKCKGNLLFIKEQDACIE-RNGSRFGWFFTXXXXXXXXXXXXXXXXXXKYRLRSYMDSEIMAIMSQYMPLDNNHNN 464
            SC+ YGPARCS+NNG CWS+T+ GLTFS+CS+S+ +GC CP GF GDG KCEDI+ECKE+SAC+CDGC C+N WGG+ECKC  N +++KE+D CIE R+GSR    FT                  KY L+SYMDSEI++IMSQY+PLD+   N
Sbjct:  460 SCKPYGPARCSMNNGDCWSETRKGLTFSSCSDSETSGCRCPLGFLGDGLKCEDIDECKEKSACKCDGCKCKNNWGGYECKCSNNSIYMKEEDTCIERRSGSRSRGLFTIVVLTAIAGISLGAYIFYKYHLQSYMDSEIVSIMSQYIPLDSQSIN 613          
BLAST of FK826741 vs. ExPASy Swiss-Prot
Match: VSR4_ARATH (Vacuolar-sorting receptor 4 OS=Arabidopsis thaliana GN=VSR4 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.645e-45
Identity = 82/161 (50.93%), Postives = 101/161 (62.73%), Query Frame = 3
Query:    9 CQAYGPARCSINNGGCWSDTKNGLTFSACSESQITGCHCPKGFRGDG-HKCEDINECKERSACQCDGCSCQNTWGGFECKCKGNLLFIKEQDACIERNGS--RFGWFFTXXXXXXXXXXXXXXXXXXKYRLRSYMDSEIMAIMSQYMPLDN-----NHNND 467
            C+  GP RC+INNGGCW + ++G  FSAC +     C CP GF+GDG  KCEDINECKE+ ACQC  CSC+NTWG +EC C G+LL++++ D CI + GS  +  W                     KYRLR YMDSEI AIM+QYMPLD+     NH ND
Sbjct:  465 CEPSGPGRCTINNGGCWHEERDGHAFSACVDKDSVKCECPPGFKGDGVKKCEDINECKEKKACQCPECSCKNTWGSYECSCSGDLLYMRDHDTCISKTGSQVKSAWAAVWLIMLSLGLAAAGAYLVYKYRLRQYMDSEIRAIMAQYMPLDSQPEVPNHTND 625          
BLAST of FK826741 vs. ExPASy Swiss-Prot
Match: VSR3_ARATH (Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana GN=VSR3 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.645e-45
Identity = 83/161 (51.55%), Postives = 101/161 (62.73%), Query Frame = 3
Query:    9 CQAYGPARCSINNGGCWSDTKNGLTFSACSESQITGCHCPKGFRGDG-HKCEDINECKERSACQCDGCSCQNTWGGFECKCKGNLLFIKEQDACIERNGS--RFGWFFTXXXXXXXXXXXXXXXXXXKYRLRSYMDSEIMAIMSQYMPLDN-----NHNND 467
            C+  GP RC+INNGGCW + ++G  FSAC +     C CP GF+GDG  KCEDINECKE+ ACQC  CSC+NTWG +EC C G+LL+I++ D CI + G+  R  W                     KYRLR YMDSEI AIM+QYMPLD+     NH ND
Sbjct:  465 CEPSGPGRCTINNGGCWHEERDGHAFSACVDKDSVKCECPPGFKGDGTKKCEDINECKEKKACQCPECSCKNTWGSYECSCSGDLLYIRDHDTCISKTGAQVRSAWAAVWLIMLSLGLAAAGAYLVYKYRLRQYMDSEIRAIMAQYMPLDSQPEIPNHVND 625          
BLAST of FK826741 vs. ExPASy Swiss-Prot
Match: VSR2_ARATH (Vacuolar-sorting receptor 2 OS=Arabidopsis thaliana GN=VSR2 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.218e-45
Identity = 80/161 (49.69%), Postives = 102/161 (63.35%), Query Frame = 3
Query:    9 CQAYGPARCSINNGGCWSDTKNGLTFSACSESQITGCHCPKGFRGDGHK-CEDINECKERSACQCDGCSCQNTWGGFECKCKGNLLFIKEQDACIERNG-SRFGWFFTXXXXXXXXXXXXXXXXXXKYRLRSYMDSEIMAIMSQYMPLDNNHNNDVPNEAQ 485
            C+A G  RC INNGGCW  T+ G T+SAC +    GC CP GF GDG K C+D+NEC+E++ACQC  C C+NTWG +EC C G+LL+I+E D CI R+    F W                     KYR+R+YMDSEI AIM+QYMPLDNN N  + ++ +
Sbjct:  464 CEASGALRCGINNGGCWKQTQMGKTYSACRDDHSKGCKCPPGFIGDGLKECKDVNECEEKTACQCRDCKCKNTWGSYECSCSGSLLYIREHDICINRDARGDFSWGVIWIIIMGLGAAALGAYTVYKYRIRTYMDSEIRAIMAQYMPLDNNPNTQLSSQLE 624          
BLAST of FK826741 vs. ExPASy Swiss-Prot
Match: VSR1_PEA (Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP80 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.927e-42
Identity = 80/161 (49.69%), Postives = 98/161 (60.87%), Query Frame = 3
Query:    6 SCQAYGPARCSINNGGCWSDTKNGLTFSACSESQITGCHCPKGFRGDGHK-CEDINECKERSACQCDGCSCQNTWGGFECKCKGNLLFIKEQDACIERNGS--RFGWFFTXXXXXXXXXXXXXXXXXXKYRLRSYMDSEIMAIMSQYMPLDN-----NHNN 464
            +C+  G  RC INNGGCW D +NG  FSAC +     C CP GF+GDG K CEDI+ECK++ ACQC  CSC+NTWG + C C G+LL+IK+QD CI +  S  +  W                     KYR+R YMDSEI AIM+QYMPLD+     NH N
Sbjct:  459 TCEVSGHGRCKINNGGCWHDARNGHAFSACLDDGGVKCQCPAGFKGDGVKNCEDIDECKDKKACQCPECSCKNTWGSYNCSCSGDLLYIKDQDTCISKTASQAKSTWAAFWVVLIALAMIAGGGFLVYKYRIRQYMDSEIRAIMAQYMPLDSQEEGPNHVN 619          
BLAST of FK826741 vs. ExPASy Swiss-Prot
Match: VSR1_ARATH (Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.289e-39
Identity = 70/156 (44.87%), Postives = 94/156 (60.26%), Query Frame = 3
Query:    9 CQAYGPARCSINNGGCWSDTKNGLTFSACSESQITGCHCPKGFRGDGHK-CEDINECKERSACQCDGCSCQNTWGGFECKCKGNLLFIKEQDACI---ERNGSRFGWFFTXXXXXXXXXXXXXXXXXXKYRLRSYMDSEIMAIMSQYMPLDNNHNN 464
            C+A G   C INNGGCW +++ G T+SAC +     C CP GF+GDG K CED++ECKE++ CQC  C C+NTWG +EC C   LL+++E D CI   +   ++  W F                   KYR+RSYMD+EI  IM+QYMPL++   N
Sbjct:  460 CKASGALHCGINNGGCWRESRGGFTYSACVDDHSKDCKCPLGFKGDGVKNCEDVDECKEKTVCQCPECKCKNTWGSYECSCSNGLLYMREHDTCIGSGKVGTTKLSWSFLWILIIGVGVAGLSGYAVYKYRIRSYMDAEIRGIMAQYMPLESQPPN 615          
The following BLAST results are available for this feature:
BLAST of FK826741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VSR7_ARATH1.991e-5960.87Vacuolar-sorting receptor 7 OS=Arabidopsis thalian... [more]
VSR6_ARATH1.477e-5462.34Vacuolar-sorting receptor 6 OS=Arabidopsis thalian... [more]
VSR5_ARATH1.382e-5258.44Vacuolar-sorting receptor 5 OS=Arabidopsis thalian... [more]
VSR4_ARATH3.645e-4550.93Vacuolar-sorting receptor 4 OS=Arabidopsis thalian... [more]
VSR3_ARATH3.645e-4551.55Vacuolar-sorting receptor 3 OS=Arabidopsis thalian... [more]
VSR2_ARATH6.218e-4549.69Vacuolar-sorting receptor 2 OS=Arabidopsis thalian... [more]
VSR1_PEA4.927e-4249.69Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP... [more]
VSR1_ARATH2.289e-3944.87Vacuolar-sorting receptor 1 OS=Arabidopsis thalian... [more]
back to top
Properties
Property NameValue
Genbank descriptionclone561 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 561, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826741 ID=FK826741; Name=FK826741; organism=Citrus sinensis; type=EST; length=668bp
ACATATCCTGTCAAGCTTATGGACCTGCAAGGTGTTCAATAAACAACGGT
GGGTGCTGGTCAGATACCAAAAATGGATTAACCTTCTCAGCTTGCTCAGA
GTCCCAAATAACAGGCTGTCATTGTCCAAAAGGCTTTCGCGGAGATGGTC
ATAAATGTGAAGATATCAACGAATGCAAGGAGCGTTCTGCTTGTCAGTGT
GATGGTTGCTCCTGTCAGAATACTTGGGGAGGATTTGAGTGCAAGTGCAA
AGGCAACCTTCTTTTTATAAAGGAGCAGGATGCTTGTATAGAGAGAAATG
GATCTCGATTTGGATGGTTCTTCACCTTCTTGGTCCTGGCAGTTGTGGTG
GGTGCTGGTGTAGCTGGTTATGTATTCTACAAATACAGACTCCGGTCTTA
CATGGACTCGGAGATCATGGCTATCATGTCACAATACATGCCTCTTGACA
ACAACCACAATAATGACGTTCCAAATGAAGCACAGCCTTTACGACATGGC
TCATCAGTGTAAGAGGCAAAAGCTGAAGCAACTCGTGCGACAAAAGGGCT
TCCTCAAGAGGACTAGATTACACTTATGCTGGCAGTGAACGTTTCGAATC
CATATAATAACAGATCCTATACAAAACAACCAGAGAGGCCACATTTGCAG
GAACTCGCGAGTTTTATG
back to top