FK826702

Overview
NameFK826702
Unique NameFK826702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length322
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2906 contig Csv1_Contig2906:954..1275. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FK826702 vs. ExPASy Swiss-Prot
Match: RRS1_ARATH (Ribosome biogenesis regulatory protein homolog OS=Arabidopsis thaliana GN=At2g37990 PE=2 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.874e-31
Identity = 68/106 (64.15%), Postives = 74/106 (69.81%), Query Frame = -2 
Query:    4 EVDLGNLLAFNHSHHFLSLPSSRXXXXXXXXXEGTKLVQAIADRLFNLPSTEDVDGPIVTLPPPTTKLPRSKHLPTPKPPTKWELFAXXXXXXXXXXXKVVWDEQT 321
            +VD+GNLLAFN +H F S PSSR         EGTKLVQ IA++LFN PSTE  DGPIV LPPPTTKLPR KH+P PKPPTKWE FA           KVVWDEQT
Sbjct:   12 QVDVGNLLAFNPNHRFPSAPSSRGELVKEILTEGTKLVQEIANKLFNFPSTETNDGPIVQLPPPTTKLPREKHIPRPKPPTKWEEFALKKGIQKRKKEKVVWDEQT 117
The following BLAST results are available for this feature:
BLAST of FK826702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RRS1_ARATH3.874e-3164.15Ribosome biogenesis regulatory protein homolog OS=... [more]
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Properties
Property NameValue
Genbank descriptionclone019 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 019, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826702 ID=FK826702; Name=FK826702; organism=Citrus sinensis; type=EST; length=322bp
ACCAGTTTGCTCATCCCAAACAACCTTGTCTTTCTTACGCTTCTTGATAC
CTTTCTTCTTGGCGAACAATTCCCATTTTGTAGGAGGTTTAGGCGTTGGT
AGATGCTTCGATCTAGGCAATTTAGTTGTAGGTGGAGGCAACGTGACAAT
AGGGCCATCTACATCTTCTGTTGAAGGTAAGTTAAAAAGACGATCTGCAA
TGGCTTGAACCAACTTCGTGCCCTCCTCTAGACATTCCTCTACTAGTTCC
TCCCTTGAAGAGGGGAGGGATAGGAAGTGGTGAGAATGGTTGAAAGCCAA
GAGATTACCGAGGTCGACTTCG
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