FK826663

Overview
NameFK826663
Unique NameFK826663
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FK826663_ssr300 microsatellite FK826663_ssr300:300..311. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6299 contig Csv1_Contig6299:8..507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826663 vs. ExPASy Swiss-Prot
Match: IDI1_CAMAC (Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 3.162e-43
Identity = 81/93 (87.10%), Postives = 85/93 (91.40%), Query Frame = -2
Query:    2 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVSHENKYNCHLMEKMESLNSLHRAFSVFLFNSKYELLLQQRSGTKATFPLVWTNTCCSHPL 280
            MGDA TDAGMDAVQ+RLMFED+CILVDEND VV H+ KYNCHLMEK+ES N LHRAFSVFLFNSKYELLLQQRS TK TFPLVWTNTCCSHPL
Sbjct:    1 MGDAATDAGMDAVQKRLMFEDKCILVDENDNVVGHDTKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPL 93          
BLAST of FK826663 vs. ExPASy Swiss-Prot
Match: IDI2_CAMAC (Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.393e-43
Identity = 81/92 (88.04%), Postives = 83/92 (90.22%), Query Frame = -2
Query:    5 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVSHENKYNCHLMEKMESLNSLHRAFSVFLFNSKYELLLQQRSGTKATFPLVWTNTCCSHP 280
            MGD  TDAGMDAVQRRLMFEDECILVDEND VV H+ KYNCHLMEK+ES N LHRAFSVFLFNSKYELLLQQRS TK TFPLVWTNTCCSHP
Sbjct:   75 MGDTATDAGMDAVQRRLMFEDECILVDENDHVVGHDTKYNCHLMEKIESDNLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHP 166          
BLAST of FK826663 vs. ExPASy Swiss-Prot
Match: IDI1_CLABR (Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 2.049e-42
Identity = 82/94 (87.23%), Postives = 86/94 (91.49%), Query Frame = -2
Query:    2 TMGDATTDAGMDAVQRRLMFEDECILVDENDRVVSHENKYNCHLMEKMESLNSLHRAFSVFLFNSKYELLLQQRSGTKATFPLVWTNTCCSHPL 283
            TMG+   DAGMDAVQRRLMFEDECILVDEND+VV HE+KYNCHLMEK+ES N LHRAFSVFLFNSKYELLLQQRS TK TFPLVWTNTCCSHPL
Sbjct:   54 TMGEVV-DAGMDAVQRRLMFEDECILVDENDKVVGHESKYNCHLMEKIESENLLHRAFSVFLFNSKYELLLQQRSATKVTFPLVWTNTCCSHPL 146          
BLAST of FK826663 vs. ExPASy Swiss-Prot
Match: IDI1_ARATH (Isopentenyl-diphosphate Delta-isomerase I OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 3.865e-41
Identity = 78/89 (87.64%), Postives = 82/89 (92.13%), Query Frame = -2
Query:    2 TTDAGMDAVQRRLMFEDECILVDENDRVVSHENKYNCHLMEKMESLNSLHRAFSVFLFNSKYELLLQQRSGTKATFPLVWTNTCCSHPL 268
            + DAGMDAVQRRLMFEDECILVDENDRVV H+ KYNCHLMEK+E+ N LHRAFSVFLFNSKYELLLQQRS TK TFPLVWTNTCCSHPL
Sbjct:    4 SNDAGMDAVQRRLMFEDECILVDENDRVVGHDTKYNCHLMEKIEAENLLHRAFSVFLFNSKYELLLQQRSKTKVTFPLVWTNTCCSHPL 92          
BLAST of FK826663 vs. ExPASy Swiss-Prot
Match: IDI2_ARATH (Isopentenyl-diphosphate Delta-isomerase II OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.125e-40
Identity = 77/89 (86.52%), Postives = 81/89 (91.01%), Query Frame = -2
Query:    2 TTDAGMDAVQRRLMFEDECILVDENDRVVSHENKYNCHLMEKMESLNSLHRAFSVFLFNSKYELLLQQRSGTKATFPLVWTNTCCSHPL 268
            T DAGMDAVQRRLMFEDECILVDE DRVV H++KYNCHLME +E+ N LHRAFSVFLFNSKYELLLQQRS TK TFPLVWTNTCCSHPL
Sbjct:   55 TKDAGMDAVQRRLMFEDECILVDETDRVVGHDSKYNCHLMENIEAKNLLHRAFSVFLFNSKYELLLQQRSNTKVTFPLVWTNTCCSHPL 143          
BLAST of FK826663 vs. ExPASy Swiss-Prot
Match: IDI2_CLAXA (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.272e-40
Identity = 77/93 (82.80%), Postives = 83/93 (89.25%), Query Frame = -2
Query:    2 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVSHENKYNCHLMEKMESLNSLHRAFSVFLFNSKYELLLQQRSGTKATFPLVWTNTCCSHPL 280
            MG+A  DAGMDAVQRRLMF+DECILVDE D VV HE+KYNCHL EK+ES N LHRAF+VFLFNSK+ELLLQQRS TK TFPLVWTNTCCSHPL
Sbjct:   57 MGEAAADAGMDAVQRRLMFDDECILVDEVDCVVGHESKYNCHLWEKIESGNMLHRAFTVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPL 149          
BLAST of FK826663 vs. ExPASy Swiss-Prot
Match: IDI2_CLABR (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 7.289e-40
Identity = 78/93 (83.87%), Postives = 84/93 (90.32%), Query Frame = -2
Query:    2 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVSHENKYNCHLMEKMESLNSLHRAFSVFLFNSKYELLLQQRSGTKATFPLVWTNTCCSHPL 280
            MG+A  DAGMDAVQRRLMF+DECILVDE DRVV HE+KYNCH+ EK+ES N LHRAFSVFLFNSK+ELLLQQRS TK TFPLVWTNTCCSHPL
Sbjct:   54 MGEAA-DAGMDAVQRRLMFDDECILVDEVDRVVGHESKYNCHMWEKIESGNMLHRAFSVFLFNSKFELLLQQRSATKVTFPLVWTNTCCSHPL 145          
BLAST of FK826663 vs. ExPASy Swiss-Prot
Match: IDI1_BOVIN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos taurus GN=IDI1 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 5.802e-21
Identity = 56/93 (60.22%), Postives = 66/93 (70.97%), Query Frame = -2
Query:    2 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVSHENKYNCHLMEKMESLNSLHRAFSVFLFNSKYELLLQQRSGTKATFPLVWTNTCCSHPL 280
            M + +TD  +D  Q +LM E  CILVDENDR +  E K NCHL E +E    LHRAFSVFLFN++ +LLLQQRS  K TFP  +TNTCCSHPL
Sbjct:    1 MPEVSTD-DLDERQVQLMAE-MCILVDENDRRIGAETKKNCHLNENIER-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPL 90          
BLAST of FK826663 vs. ExPASy Swiss-Prot
Match: IDI1_MACFA (Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis GN=IDI1 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 6.415e-20
Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = -2
Query:    2 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVSHENKYNCHLMEKMESLNSLHRAFSVFLFNSKYELLLQQRSGTKATFPLVWTNTCCSHPL 280
            M +  TD  +D  Q +L+ E  CIL+DEND  +  E K NCHL E +E    LHRAFSVFLFN++ +LLLQQRS  K TFP  +TNTCCSHPL
Sbjct:    1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPL 90          
BLAST of FK826663 vs. ExPASy Swiss-Prot
Match: IDI1_HUMAN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 8.379e-20
Identity = 50/84 (59.52%), Postives = 60/84 (71.43%), Query Frame = -2
Query:    2 MDAVQRRLMFEDECILVDENDRVVSHENKYNCHLMEKMESLNSLHRAFSVFLFNSKYELLLQQRSGTKATFPLVWTNTCCSHPL 253
            +D  Q +L+ E  CIL+DEND  +  E K NCHL E +E    LHRAFSVFLFN++ +LLLQQRS  K TFP  +TNTCCSHPL
Sbjct:    9 LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPL 90          
The following BLAST results are available for this feature:
BLAST of FK826663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
IDI1_CAMAC3.162e-4387.10Isopentenyl-diphosphate Delta-isomerase I OS=Campt... [more]
IDI2_CAMAC5.393e-4388.04Isopentenyl-diphosphate Delta-isomerase II OS=Camp... [more]
IDI1_CLABR2.049e-4287.23Isopentenyl-diphosphate Delta-isomerase I OS=Clark... [more]
IDI1_ARATH3.865e-4187.64Isopentenyl-diphosphate Delta-isomerase I OS=Arabi... [more]
IDI2_ARATH1.125e-4086.52Isopentenyl-diphosphate Delta-isomerase II OS=Arab... [more]
IDI2_CLAXA3.272e-4082.80Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI2_CLABR7.289e-4083.87Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI1_BOVIN5.802e-2160.22Isopentenyl-diphosphate Delta-isomerase 1 OS=Bos t... [more]
IDI1_MACFA6.415e-2056.99Isopentenyl-diphosphate Delta-isomerase 1 OS=Macac... [more]
IDI1_HUMAN8.379e-2059.52Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionclone187 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 187, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826663 ID=FK826663; Name=FK826663; organism=Citrus sinensis; type=EST; length=500bp
ACAGAGGATGGCTGCAGCAGGTGTTAGTCCACACAAGAGGGAAGGTAGCT
TTGGTTCCAGAGCGTTGCTGAAGGAGTAGCTCATATTTTGAGTTAAACAA
AAATACGCTGAAGGCTCTGTGTAGCGAATTCAAAGACTCCATCTTTTCCA
TCAAGTGACAGTTGTATTTGTTTTCATGACTAACAACGCGATCATTCTCA
TCCACCAAAATGCATTCGTCTTCAAACATGAGGCGGCGCTGGACAGCGTC
CATGCCGGCATCAGTAGTAGCGTCACCCATAGTGCTGATTGCGCGAGCGG
AAGAAGAAGAAGAGCTAGAACGAGAGGCACCTCTCAAGGACAGAGGCCTG
CGAATCGAAGAAACCCTAGGGGCGAAATGGGAAGAGGAGAAAAATAGACG
GGACTTCGAGAAAGAAGAAGAGTTGTTGATTAGTGAGGAGCAGAGTTTGG
TTGTGGCGCAGTTATAAAGCGTAGTAGTAGACATTGGGACCTCCCCCGCG
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