FK826655

Overview
NameFK826655
Unique NameFK826655
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length296
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3631 contig Csv1_Contig3631:164..459. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826655 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 3.045e-44
Identity = 82/98 (83.67%), Postives = 89/98 (90.82%), Query Frame = 3
Query:    3 TEFTGNFTGIAAQCLQKLPSSNNKSTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFPERVKEDFTKRYGGGKAATAVANGLNKEFGPELKEHMQ 296
            TEF GNFT +AAQCLQKLPSSNNK TYNCDGHTFNYLV++GFTYCVVAVESVGRQ+P+AF ERVKEDF KRYGGGKA TA AN LN+EFG +LKEHMQ
Sbjct:   87 TEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQ 184          
BLAST of FK826655 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 3.045e-44
Identity = 82/98 (83.67%), Postives = 89/98 (90.82%), Query Frame = 3
Query:    3 TEFTGNFTGIAAQCLQKLPSSNNKSTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFPERVKEDFTKRYGGGKAATAVANGLNKEFGPELKEHMQ 296
            T+F GNFT IAAQCLQKLPSSNNK TYNCDGHTFNYLV+DGFTYCVVAV+S GRQ+P++F ERVKEDF KRYGGGKAATA AN LNKEFG +LKEHMQ
Sbjct:   22 TDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQ 119          
BLAST of FK826655 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 5.195e-44
Identity = 82/98 (83.67%), Postives = 89/98 (90.82%), Query Frame = 3
Query:    3 TEFTGNFTGIAAQCLQKLPSSNNKSTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFPERVKEDFTKRYGGGKAATAVANGLNKEFGPELKEHMQ 296
            T+F GNFT IAAQCLQKLPSSNNK TYNCDGHTFNYLV++GFTYCVVAV+S GRQ+P+AF ERVKEDF KRYGGGKAATA AN LNKEFG +LKEHMQ
Sbjct:   22 TDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQ 119          
BLAST of FK826655 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 1.157e-43
Identity = 80/98 (81.63%), Postives = 87/98 (88.78%), Query Frame = 3
Query:    3 TEFTGNFTGIAAQCLQKLPSSNNKSTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFPERVKEDFTKRYGGGKAATAVANGLNKEFGPELKEHMQ 296
            TEF GNFT +AAQCLQKLPSSNNK TYNCDGHTFNYL D+GFTYCVV +ES GRQ+P+AF ERVKEDF KRYGGGKA+TA AN LNKEFG +LKEHMQ
Sbjct:   22 TEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQ 119          
BLAST of FK826655 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.261e-38
Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 3
Query:    3 TEFTGNFTGIAAQCLQKLPSSNNKSTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFPERVKEDFTKRYGGGKAATAVANGLNKEFGPELKEHMQ 296
            T+F GNFT +AAQ L+ LPSSNNK TYNCDGHTFN LV++GFTYCVVAV+S GR++P+AF ERVKEDF KRYGG KAAT  AN LNKEFG  LKEHMQ
Sbjct:   22 TDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQ 119          
BLAST of FK826655 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 6.150e-37
Identity = 72/98 (73.47%), Postives = 83/98 (84.69%), Query Frame = 3
Query:    3 TEFTGNFTGIAAQCLQKLPSSNN-KSTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFPERVKEDFTKRYGGGKAATAVANGLNKEFGPELKEHM 293
            TEFTGNF  IAAQCLQKLPSS+N K TYNCD HTFN+LV+DG+ YCVVA +S+ +Q+ IAF ERVK DF KRYGGGKA+TA+A  LNKEFGP +KEHM
Sbjct:   22 TEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHM 119          
BLAST of FK826655 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.193e-26
Identity = 61/117 (52.14%), Postives = 75/117 (64.10%), Query Frame = 3
Query:    3 TEFTGNFTGIAAQCLQKLPSSNNKSTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFPERVKEDFTKRYGGG-------------------KAATAVANGLNKEFGPELKEHMQ 296
            T ++GNF+ IA QCLQKLP++++K TY+CDGHTFN+LVD+GF + VVA ES GR VP  F ERVKEDF KRY                          +VA  L++EFGP LKEHMQ
Sbjct:   22 TPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQ 138          
BLAST of FK826655 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.992e-11
Identity = 36/97 (37.11%), Postives = 52/97 (53.61%), Query Frame = 3
Query:    3 TEFTGNFTGIAAQCLQKLPSSNNKSTYNCDGHTFNYLVDDGFTYCVVAVESVGRQVPIAFPERVKEDFTKRYGGGKAATAVANGLNKEFGPELKEHM 293
            T   GNF  I  + L  +P ++ K +Y  + + F+YLV D  TY  +A E  GR++P  F + VK  F   Y G K  TA+A G+N +F   L+  M
Sbjct:   19 TSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMY-GDKGKTAIAYGMNSDFSRTLENLM 114          
The following BLAST results are available for this feature:
BLAST of FK826655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VA725_ARATH3.045e-4483.67Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA721_ARATH3.045e-4483.67Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA722_ARATH5.195e-4483.67Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA726_ARATH1.157e-4381.63Putative vesicle-associated membrane protein 726 O... [more]
VA723_ARATH3.261e-3875.51Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA724_ARATH6.150e-3773.47Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA727_ARATH2.193e-2652.14Vesicle-associated membrane protein 727 OS=Arabido... [more]
VAM7B_DICDI1.992e-1137.11Vesicle-associated membrane protein 7B OS=Dictyost... [more]
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Properties
Property NameValue
Genbank descriptionclone161 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 161, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826655 ID=FK826655; Name=FK826655; organism=Citrus sinensis; type=EST; length=296bp
ACACGGAGTTCACCGGAAACTTCACCGGCATAGCTGCTCAGTGTCTCCAG
AAACTTCCTTCTAGTAACAACAAGTCCACTTACAATTGCGACGGCCACAC
TTTTAACTACCTCGTTGATGACGGCTTCACTTACTGTGTGGTTGCAGTTG
AATCTGTTGGTCGACAGGTTCCAATTGCCTTCCCTGAGCGTGTGAAAGAG
GATTTTACAAAGAGATATGGTGGAGGAAAAGCTGCAACAGCGGTCGCTAA
CGGCTTGAACAAGGAGTTTGGGCCCGAATTGAAGGAGCATATGCAG
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