FK826654

Overview
NameFK826654
Unique NameFK826654
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length132
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2550 contig Csv1_Contig2550:418..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FK826654 vs. ExPASy Swiss-Prot
Match: OAT_DICDI (Probable ornithine aminotransferase OS=Dictyostelium discoideum GN=oatA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.191e-14
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = -1 
Query:    1 LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 132
            LPMNTGAE VET++KLAR+WGYVKK  + D+AI++SC GCFHGR
Sbjct:  110 LPMNTGAEAVETSIKLARRWGYVKKGIAEDQAIVISCKGCFHGR 153
[Close]
BLAST of FK826654 vs. ExPASy Swiss-Prot
Match: OAT_YEAST (Ornithine aminotransferase OS=Saccharomyces cerevisiae GN=CAR2 PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.442e-11
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = -1 
Query:    1 LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 132
            LPMNTGAE VETALKLAR+WGY+KK    D+AII+   G FHGR
Sbjct:  105 LPMNTGAEAVETALKLARRWGYMKKNIPQDKAIILGAEGNFHGR 148
[Close]
BLAST of FK826654 vs. ExPASy Swiss-Prot
Match: OAT_SCHPO (Probable ornithine aminotransferase OS=Schizosaccharomyces pombe GN=SPBC21C3.08c PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.442e-11
Identity = 31/44 (70.45%), Postives = 33/44 (75.00%), Query Frame = -1 
Query:    1 LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 132
            +PMNTGAE VETA KLAR WGY  KK   DEAII+SC   FHGR
Sbjct:  110 IPMNTGAEAVETACKLARLWGYKAKKIPTDEAIILSCVDNFHGR 153
The following BLAST results are available for this feature:
BLAST of FK826654 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
OAT_DICDI7.191e-1472.73Probable ornithine aminotransferase OS=Dictyosteli... [more]
OAT_YEAST7.442e-1170.45Ornithine aminotransferase OS=Saccharomyces cerevi... [more]
OAT_SCHPO7.442e-1170.45Probable ornithine aminotransferase OS=Schizosacch... [more]
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Properties
Property NameValue
Genbank descriptionclone159 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 159, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826654 ID=FK826654; Name=FK826654; organism=Citrus sinensis; type=EST; length=132bp
GCGACCATGGAAGCAGCCACAACAAGAAACAATGATAGCCTCATCTATGG
AAAATTTTTTCTTCACGTAACCCCATTTCCTAGCCAACTTCAGAGCTGTC
TCCACACCTTCGGCACCGGTGTTCATAGGTAG
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