FK826652

Overview
NameFK826652
Unique NameFK826652
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5856 contig Csv1_Contig5856:308..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FK826652 vs. ExPASy Swiss-Prot
Match: VP371_ARATH (Vacuolar protein-sorting-associated protein 37 homolog 1 OS=Arabidopsis thaliana GN=VPS37-1 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.391e-42
Identity = 87/125 (69.60%), Postives = 104/125 (83.20%), Query Frame = 3 
Query:   48 SMSSFGSLNLQRPTEQSQPLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLK 422
            S S   S +  RP    Q  + VSP EAAGII  LKDKSVDELRKLL+DKDAY+QFLLS+DQVK+QNNI+DEL RETLQ+ARDNL+KE +++ELRNQ +IIRTTELA AQEKL++LERQKE++LK
Sbjct:   28 SPSLVSSPSSSRPQSSGQISAQVSPGEAAGIIVFLKDKSVDELRKLLSDKDAYQQFLLSLDQVKVQNNIKDELRRETLQLARDNLEKEPQIMELRNQCRIIRTTELATAQEKLNELERQKEEILK 152
[Close]
BLAST of FK826652 vs. ExPASy Swiss-Prot
Match: VP372_ARATH (Vacuolar protein-sorting-associated protein 37 homolog 2 OS=Arabidopsis thaliana GN=VPS37-2 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 1.020e-39
Identity = 86/130 (66.15%), Postives = 106/130 (81.54%), Query Frame = 3 
Query:   39 ATP--SMSSFGSLNLQRPTEQSQPLSHVSPAEAAGIIALLKDKSVDELRKLLADKDAYRQFLLSIDQVKIQNNIRDELHRETLQIARDNLDKELRMIELRNQSKIIRTTELAAAQEKLHDLERQKEQLLK 422
            ATP  S S   S +  RP    Q  SHVSP EAAGIIA+LKDKSVDELRKLL+DKDAY+QFL S+DQV IQNNIR+EL +ETL +AR+NL+KE +++ELRNQ +IIRT+ELA AQEKL++LE Q+E++LK
Sbjct:   23 ATPWYSPSLVTSPSSSRPQTSGQIPSHVSPGEAAGIIAILKDKSVDELRKLLSDKDAYQQFLHSLDQVTIQNNIREELRKETLHLARENLEKEPQIVELRNQCRIIRTSELATAQEKLNELENQREEILK 152
The following BLAST results are available for this feature:
BLAST of FK826652 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
VP371_ARATH6.391e-4269.60Vacuolar protein-sorting-associated protein 37 hom... [more]
VP372_ARATH1.020e-3966.15Vacuolar protein-sorting-associated protein 37 hom... [more]
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Properties
Property NameValue
Genbank descriptionclone152 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 152, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826652 ID=FK826652; Name=FK826652; organism=Citrus sinensis; type=EST; length=425bp
ACCCTCCATCTGTAGTCTCCCCAGATTCTTCCCGCCCTGCTACGCCTAGT
ATGAGCTCTTTTGGCAGCTTAAATTTACAAAGGCCAACAGAACAGTCACA
ACCCCTATCACATGTTTCACCAGCTGAAGCTGCAGGCATTATTGCCCTCT
TGAAGGACAAAAGTGTTGATGAGTTACGGAAGCTCTTGGCGGATAAGGAT
GCATACCGCCAATTTTTACTCTCAATTGATCAAGTTAAAATTCAAAACAA
TATAAGGGATGAACTTCACAGGGAAACTTTGCAAATTGCCAGGGACAACT
TGGACAAGGAACTGCGCATGATTGAGCTTAGAAACCAAAGTAAAATTATT
CGGACAACAGAATTGGCTGCTGCTCAGGAGAAATTACACGATCTTGAGAG
ACAGAAAGAACAACTTTTGAAGTTG
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