FK826646

Overview
NameFK826646
Unique NameFK826646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length147
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9716 contig Csv1_Contig9716:800..946. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FK826646 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.291e-20
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = -3
Query:    2 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQ 145
            NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQ
Sbjct:  749 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQ 796          
BLAST of FK826646 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.540e-19
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = -3
Query:    2 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQ 145
            NTLLIMTSNVGSSVIEKGGRRIGFDLD+DEKDSSYNRIKSLVTEELKQ
Sbjct:  752 NTLLIMTSNVGSSVIEKGGRRIGFDLDFDEKDSSYNRIKSLVTEELKQ 799          
BLAST of FK826646 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.480e-19
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = -3
Query:    2 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQ 145
            NTLLIMTSNVGSSVIEKGGRRIGFDLD DEKDSSYNRIKSLVTEELKQ
Sbjct:  749 NTLLIMTSNVGSSVIEKGGRRIGFDLDLDEKDSSYNRIKSLVTEELKQ 796          
BLAST of FK826646 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.441e-17
Identity = 46/48 (95.83%), Postives = 47/48 (97.92%), Query Frame = -3
Query:    2 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQ 145
            NTLLIMTSNVGSSVIEKGGRRIGFDLDY EKDSSYNRIKSLVT+ELKQ
Sbjct:  697 NTLLIMTSNVGSSVIEKGGRRIGFDLDY-EKDSSYNRIKSLVTQELKQ 743          
BLAST of FK826646 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.304e-12
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = -3
Query:    2 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQ 145
            NTLLI+TSNVGS VIEKGG  +GFDL  D+ +S Y RIK+LV EELKQ
Sbjct:  652 NTLLILTSNVGSKVIEKGGGGLGFDLSEDQTESQYGRIKALVNEELKQ 699          
BLAST of FK826646 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.047e-12
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = -3
Query:    2 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQ 145
            NTLLIMTSN+GS VIEKGG  +GF+L  D+ +S Y R++SLV EELKQ
Sbjct:  655 NTLLIMTSNIGSKVIEKGGGSLGFELSEDQTESQYTRVRSLVNEELKQ 702          
BLAST of FK826646 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.047e-12
Identity = 32/48 (66.67%), Postives = 39/48 (81.25%), Query Frame = -3
Query:    2 NTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQ 145
            NTLLIMTSN+GS VIEKGG  +GF+L  D+ +S Y R++SLV EELKQ
Sbjct:  655 NTLLIMTSNIGSKVIEKGGGSLGFELSEDQTESQYTRVRSLVNEELKQ 702          
The following BLAST results are available for this feature:
BLAST of FK826646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CLPC_PEA5.291e-20100.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC1.540e-1997.92ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAB_SOLLC4.480e-1997.92ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA1.441e-1795.83ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH5.304e-1270.83ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE9.047e-1266.67ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU9.047e-1266.67ATP-dependent Clp protease ATP-binding subunit clp... [more]
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Properties
Property NameValue
Genbank descriptionclone059 Citrus sinensis low-temperature inducible suppression subtractive hybridization (SSH) library Citrus sinensis cDNA clone 059, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FK826646 ID=FK826646; Name=FK826646; organism=Citrus sinensis; type=EST; length=147bp
ACTGCTTCAATTCCTCAGTTACCAGACTCTTAATCCTGTTGTAACTGCTG
TCTTTCTCATCATAATCAAGATCAAAACCAATGCGGCGTCCTCCCTTCTC
AATTACACTGCTTCCAACATTTGATGTCATTATTAGAAGAGTATTCT
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