FE660222

Overview
NameFE660222
Unique NameFE660222
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig971 contig Csv1_Contig971:129..604. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE660222 vs. ExPASy Swiss-Prot
Match: ALIS4_ARATH (Putative ALA-interacting subunit 4 OS=Arabidopsis thaliana GN=ALIS4 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 1.333e-61
Identity = 110/158 (69.62%), Postives = 127/158 (80.38%), Query Frame = 3
Query:    3 YQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLDESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNT 476
            YQL+N+YQNHRRYVKSR D QL+      ET  C PEDT   G+PIVPCGL+AWSLFNDTY F+RN ++L VNK  I+WKSDR+ KFGK VFP NFQ G+LIGG  LD+ IPLS+QEDLIVWMRTAALPTFRKLYGKI+ DL+  D I V+L+NNYNT
Sbjct:  128 YQLENYYQNHRRYVKSRQDGQLRSPKDEHETKSCAPEDTL-GGQPIVPCGLVAWSLFNDTYDFTRNNQKLPVNKKDISWKSDRESKFGKNVFPKNFQKGSLIGGKSLDQDIPLSEQEDLIVWMRTAALPTFRKLYGKIDTDLQAGDTIKVLLQNNYNT 284          
BLAST of FE660222 vs. ExPASy Swiss-Prot
Match: ALIS5_ARATH (ALA-interacting subunit 5 OS=Arabidopsis thaliana GN=ALIS5 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 2.969e-61
Identity = 111/158 (70.25%), Postives = 126/158 (79.75%), Query Frame = 3
Query:    3 YQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLDESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNT 476
            YQL+NFYQNHRRYVKSRND QL+   +  +   C PED    G+PIVPCGL+AWSLFNDTY+FSRN +QL VNK GI+WKSDR++KFGK VFP NFQ G  IGG  L+ S PLS+QEDLIVWMRTAALPTFRKLYGKIE DL   D I V+L+NNYNT
Sbjct:  125 YQLENFYQNHRRYVKSRNDAQLRSPKEEHDVKTCAPEDNV-GGEPIVPCGLVAWSLFNDTYSFSRNSQQLLVNKKGISWKSDRENKFGKNVFPKNFQKGAPIGGGTLNISKPLSEQEDLIVWMRTAALPTFRKLYGKIETDLHAGDTITVLLQNNYNT 281          
BLAST of FE660222 vs. ExPASy Swiss-Prot
Match: ALIS1_ARATH (ALA-interacting subunit 1 OS=Arabidopsis thaliana GN=ALIS1 PE=1 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 3.877e-61
Identity = 112/158 (70.89%), Postives = 126/158 (79.75%), Query Frame = 3
Query:    3 YQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLDESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNT 476
            YQL+NFYQNHRRYVKSR+D QL+     ++   C+PED    G+PIVPCGLIAWSLFNDTY  SRN + LTVNK GIAWKSD++HKFGK VFP NFQ G L GGA LD + PLS QEDLIVWMRTAALPTFRKLYGKIE DLE+ + I V L+NNYNT
Sbjct:  126 YQLENFYQNHRRYVKSRSDSQLRSVKDENQIDACKPEDDF-GGQPIVPCGLIAWSLFNDTYVLSRNNQGLTVNKKGIAWKSDKEHKFGKNVFPKNFQKGNLTGGASLDPNKPLSDQEDLIVWMRTAALPTFRKLYGKIESDLEKGENIQVTLQNNYNT 282          
BLAST of FE660222 vs. ExPASy Swiss-Prot
Match: ALIS3_ARATH (ALA-interacting subunit 3 OS=Arabidopsis thaliana GN=ALIS3 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 6.614e-61
Identity = 112/158 (70.89%), Postives = 124/158 (78.48%), Query Frame = 3
Query:    3 YQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLDESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNT 476
            YQL+NFYQNHRRYVKSR+D QL+     ++ S C+PED    G+PIVPCGLIAWSLFNDTY  SRN   L VNK GIAWKSD++HKFG +VFP NFQ G + GGA LD  IPLS+QEDLIVWMRTAALPTFRKLYGKIE DLE  D I V L NNYNT
Sbjct:  125 YQLENFYQNHRRYVKSRSDSQLRSTKYENQISACKPEDDV-GGQPIVPCGLIAWSLFNDTYALSRNNVSLAVNKKGIAWKSDKEHKFGNKVFPKNFQKGNITGGATLDPRIPLSEQEDLIVWMRTAALPTFRKLYGKIESDLEMGDTIHVKLNNNYNT 281          
BLAST of FE660222 vs. ExPASy Swiss-Prot
Match: ALIS2_ARATH (Putative ALA-interacting subunit 2 OS=Arabidopsis thaliana GN=ALIS2 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 2.513e-60
Identity = 109/158 (68.99%), Postives = 130/158 (82.28%), Query Frame = 3
Query:    3 YQLDNFYQNHRRYVKSRNDEQLKKRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQLTVNKNGIAWKSDRDHKFGKEVFPSNFQNGTLIGGAHLDESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNT 476
            YQLDN+YQNHRRYVKSR+D+QL    + S TS CEPE+++ +G PIVPCGLIAWS+FNDT+TFSR + +L V++N IAWKSDR+HKFGK V+P NFQNGTLIGGA LD  IPLS QED IVWMR AAL +FRKLYG+IE DLE   +++V L NNYNT
Sbjct:  122 YQLDNYYQNHRRYVKSRSDQQLLHGLEYSHTSSCEPEESS-NGLPIVPCGLIAWSMFNDTFTFSRERTKLNVSRNNIAWKSDREHKFGKNVYPINFQNGTLIGGAKLDPKIPLSDQEDFIVWMRAAALLSFRKLYGRIEEDLEPGKVVEVNLMNNYNT 278          
BLAST of FE660222 vs. ExPASy Swiss-Prot
Match: CC50A_CHICK (Cell cycle control protein 50A OS=Gallus gallus GN=TMEM30A PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.466e-24
Identity = 74/156 (47.44%), Postives = 89/156 (57.05%), Query Frame = 3
Query:    3 YQLDNFYQNHRRYVKSRNDEQLK--KRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDT---YTFSRNKRQ-LTVNKNGIAWKSDRDHKFGKEVFPSN----FQNGTLIGG----AHLDESIPLSK---QEDLIVWMRTAALPTFRKLYGKIE 419
            Y L NFYQNHRRYVKSR+D QL     S  + + +CEP  T  D KPI PCG IA S+FNDT   Y    + R  +T+ K GIAW +D++ KF       N    FQ  T         ++ +S P +     ED IVWMRTAALPTFRKLY  IE
Sbjct:  134 YGLSNFYQNHRRYVKSRDDSQLNGDNSSLLNPSKECEPYRTNED-KPIAPCGAIANSMFNDTLELYHIENDTRTAITLIKKGIAWWTDKNVKFRNPKGDGNLTALFQGTTKPVNWPKPVYMLDSEPDNNGFINEDFIVWMRTAALPTFRKLYRLIE 288          
BLAST of FE660222 vs. ExPASy Swiss-Prot
Match: CC50A_RAT (Cell cycle control protein 50A OS=Rattus norvegicus GN=Tmem30a PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.457e-23
Identity = 71/160 (44.38%), Postives = 86/160 (53.75%), Query Frame = 3
Query:    3 YQLDNFYQNHRRYVKSRNDEQLK--KRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQ-------LTVNKNGIAWKSDRDHKF----GKEVFPSNFQNGTLIGGAHL--------DESIPLSKQEDLIVWMRTAALPTFRKLYGKIE 419
            Y L NFYQNHRRYVKSR+D QL     +  + + +CEP     D KPI PCG IA S+FNDT        +       + + K GIAW +D++ KF    GK+     F++ T     H         DES      ED IVWMRTAALPTFRKLY  IE
Sbjct:   86 YGLSNFYQNHRRYVKSRDDSQLNGDPSALLNPSKECEPYRRNED-KPIAPCGAIANSMFNDTLELFLVANESDPKPVPILLKKKGIAWWTDKNVKFRNPPGKDSLQEKFKDTTKPVNWHKPVYELDPDDESNNGFINEDFIVWMRTAALPTFRKLYRLIE 244          
BLAST of FE660222 vs. ExPASy Swiss-Prot
Match: CC50A_PONAB (Cell cycle control protein 50A OS=Pongo abelii GN=TMEM30A PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.148e-23
Identity = 69/157 (43.95%), Postives = 85/157 (54.14%), Query Frame = 3
Query:    3 YQLDNFYQNHRRYVKSRNDEQLKKRSKT--SETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTF-----SRNKRQLTVNKNGIAWKSDRDHKFG--------KEVFPSNFQNGTLIGGAHLDESIPLSK---QEDLIVWMRTAALPTFRKLYGKIE 419
            Y L NFYQNHRRYVKSR+D QL   S    + + +CEP     D KPI PCG IA S+FNDT              + + K GIAW +D++ KF         KE F    +    +   ++ +S P +     ED IVWMRTAALPTFRKLY  IE
Sbjct:  122 YGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNED-KPIAPCGAIANSMFNDTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRNPPGGDNLKERFKGTTKPVNWLKPVYMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIE 277          
BLAST of FE660222 vs. ExPASy Swiss-Prot
Match: CC50A_MOUSE (Cell cycle control protein 50A OS=Mus musculus GN=Tmem30a PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.219e-22
Identity = 70/160 (43.75%), Postives = 85/160 (53.12%), Query Frame = 3
Query:    3 YQLDNFYQNHRRYVKSRNDEQLK--KRSKTSETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTFSRNKRQ-------LTVNKNGIAWKSDRDHKF----GKEVFPSNFQNGTLIGGAHL--------DESIPLSKQEDLIVWMRTAALPTFRKLYGKIE 419
            Y L NFYQNHRRYVKSR+D QL     +  + + +CEP     D +PI PCG IA S+FNDT        +       + + K GIAW +D++ KF    GKE     F++       H         DES      ED IVWMRTAALPTFRKLY  IE
Sbjct:  122 YGLSNFYQNHRRYVKSRDDSQLNGDPSALLNPSKECEPYRRNED-RPIAPCGAIANSMFNDTLELYLVANESDPKPIPIPLKKKGIAWWTDKNVKFRNPPGKESLEEKFKDTIKPVNWHKAVYELDPEDESNNGFINEDFIVWMRTAALPTFRKLYRLIE 280          
BLAST of FE660222 vs. ExPASy Swiss-Prot
Match: CC50A_HUMAN (Cell cycle control protein 50A OS=Homo sapiens GN=TMEM30A PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.593e-22
Identity = 69/157 (43.95%), Postives = 86/157 (54.78%), Query Frame = 3
Query:    3 YQLDNFYQNHRRYVKSRNDEQLKKRSKT--SETSQCEPEDTTPDGKPIVPCGLIAWSLFNDTYTF-----SRNKRQLTVNKNGIAWKSDRDHKF----GKEVFPSNFQNGTL----IGGAHLDESIPLSK---QEDLIVWMRTAALPTFRKLYGKIE 419
            Y L NFYQNHRRYVKSR+D QL   S    + + +CEP     D KPI PCG IA S+FNDT              + + K GIAW +D++ KF    G +     F+  T     +   ++ +S P +     ED IVWMRTAALPTFRKLY  IE
Sbjct:  122 YGLSNFYQNHRRYVKSRDDSQLNGDSSALLNPSKECEPYRRNED-KPIAPCGAIANSMFNDTLELFLIGNDSYPIPIALKKKGIAWWTDKNVKFRNPPGGDNLEERFKGTTKPVNWLKPVYMLDSDPDNNGFINEDFIVWMRTAALPTFRKLYRLIE 277          
The following BLAST results are available for this feature:
BLAST of FE660222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
ALIS4_ARATH1.333e-6169.62Putative ALA-interacting subunit 4 OS=Arabidopsis ... [more]
ALIS5_ARATH2.969e-6170.25ALA-interacting subunit 5 OS=Arabidopsis thaliana ... [more]
ALIS1_ARATH3.877e-6170.89ALA-interacting subunit 1 OS=Arabidopsis thaliana ... [more]
ALIS3_ARATH6.614e-6170.89ALA-interacting subunit 3 OS=Arabidopsis thaliana ... [more]
ALIS2_ARATH2.513e-6068.99Putative ALA-interacting subunit 2 OS=Arabidopsis ... [more]
CC50A_CHICK6.466e-2447.44Cell cycle control protein 50A OS=Gallus gallus GN... [more]
CC50A_RAT2.457e-2344.38Cell cycle control protein 50A OS=Rattus norvegicu... [more]
CC50A_PONAB7.148e-2343.95Cell cycle control protein 50A OS=Pongo abelii GN=... [more]
CC50A_MOUSE1.219e-2243.75Cell cycle control protein 50A OS=Mus musculus GN=... [more]
CC50A_HUMAN1.593e-2243.95Cell cycle control protein 50A OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionA20 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE660222 ID=FE660222; Name=FE660222; organism=Citrus sinensis; type=EST; length=476bp
ACTATCAACTCGATAACTTCTACCAGAATCATCGCAGATATGTTAAGAGC
CGAAATGATGAGCAGTTGAAAAAACGGAGTAAAACAAGTGAAACATCTCA
GTGTGAGCCCGAAGATACCACCCCAGATGGAAAGCCCATTGTCCCTTGTG
GCCTTATTGCTTGGAGTTTGTTTAATGATACATACACTTTTTCTCGCAAC
AAGAGACAGTTGACAGTGAACAAGAACGGTATCGCTTGGAAGAGTGATAG
GGATCACAAGTTTGGCAAAGAAGTTTTCCCTAGTAACTTCCAAAATGGGA
CTCTGATAGGTGGTGCACATCTTGATGAATCCATACCATTGAGTAAGCAA
GAGGACCTTATAGTTTGGATGCGGACAGCAGCTTTGCCCACTTTTAGGAA
GCTGTATGGGAAAATAGAGGTGGATCTTGAAGAGAATGATATTATCGATG
TGATATTGGAAAACAACTACAACACG
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