FE659323

Overview
NameFE659323
Unique NameFE659323
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length169
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2169 contig Csv1_Contig2169:417..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.317e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -3 
Query:    3 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 167
            SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK
Sbjct:  107 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 161
[Close]
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.317e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -3 
Query:    3 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 167
            SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK
Sbjct:  107 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 161
[Close]
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.317e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -3 
Query:    3 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 167
            SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK
Sbjct:  107 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 161
[Close]
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.317e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -3 
Query:    3 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 167
            SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK
Sbjct:  107 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 161
[Close]
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.317e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -3 
Query:    3 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 167
            SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK
Sbjct:  107 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 161
[Close]
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 6.317e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -3 
Query:    3 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 167
            SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK
Sbjct:  107 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 161
[Close]
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.317e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -3 
Query:    3 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 167
            SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK
Sbjct:  107 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 161
[Close]
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.317e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -3 
Query:    3 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 167
            SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK
Sbjct:  107 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 161
[Close]
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.317e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -3 
Query:    3 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 167
            SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK
Sbjct:  107 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 161
[Close]
BLAST of FE659323 vs. ExPASy Swiss-Prot
Match: EF1A2_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.317e-26
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = -3 
Query:    3 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 167
            SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK
Sbjct:  107 SQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPK 161
The following BLAST results are available for this feature:
BLAST of FE659323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
EF1A_WHEAT6.317e-26100.00Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_VICFA6.317e-26100.00Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]
EF1A_TOBAC6.317e-26100.00Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_SOLLC6.317e-26100.00Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_PEA6.317e-26100.00Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A_ORYSJ6.317e-26100.00Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_MANES6.317e-26100.00Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_MAIZE6.317e-26100.00Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A_ARATH6.317e-26100.00Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A2_DAUCA6.317e-26100.00Elongation factor 1-alpha OS=Daucus carota PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionA85 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659323 ID=FE659323; Name=FE659323; organism=Citrus sinensis; type=EST; length=169bp
TACTTGGGGGTGGTGGCATCCATCTTGTTACAGCAGCAAATCATCTGCTT
CACACCAAGGGTGAAAGCAAGCAAAGCATGCTCACGAGTCTGACCATCCT
TGGAGATACCAGCTTCAAAACCACCGGTGGTAGAGTCAATGATAAGGACG
GCACAGTCAGCCTGTGAGG
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