FE659289

Overview
NameFE659289
Unique NameFE659289
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length178
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4446 contig Csv1_Contig4446:1020..1197. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659289 vs. ExPASy Swiss-Prot
Match: STAD_SOLCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum commersonii PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.545e-16
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    3 TAKDYADILAFLIERWEVEKLMGLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKA 173
            TAKDYADIL FL+ RWE+EKL GL+ EG KARD+VCGL  RIR+LE++AQA   +KA
Sbjct:  323 TAKDYADILEFLVGRWEIEKLTGLSGEGHKARDYVCGLAPRIRKLEERAQARAKQKA 379          
BLAST of FE659289 vs. ExPASy Swiss-Prot
Match: STAD_OLEEU (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Olea europaea PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.871e-16
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 3
Query:    3 TAKDYADILAFLIERWEVEKLMGLTSEGRKARDFVCGLPSRIRRLEDKAQANMAK 167
            TAKDYADIL FL+ RW++EKL GL+ EGRKA+D+VC LP RIRRLE++AQ+ + K
Sbjct:  320 TAKDYADILEFLVGRWDIEKLTGLSGEGRKAQDYVCTLPPRIRRLEERAQSRVKK 374          
BLAST of FE659289 vs. ExPASy Swiss-Prot
Match: STAD_SOYBN (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Glycine max GN=ACPD PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.668e-16
Identity = 36/57 (63.16%), Postives = 49/57 (85.96%), Query Frame = 3
Query:    3 TAKDYADILAFLIERWEVEKLMGLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKA 173
            TAKDYADIL FL+ RW+VE+L GL+ EGRKA++++CGLP RIRRLE++AQA + + +
Sbjct:  321 TAKDYADILEFLVGRWKVEQLTGLSGEGRKAQEYICGLPPRIRRLEERAQARVKESS 377          
BLAST of FE659289 vs. ExPASy Swiss-Prot
Match: STAD_SPIOL (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.308e-15
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 3
Query:    3 TAKDYADILAFLIERWEVEKLMGLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKA 173
            TAKDYADIL FL+ RWEVEKL GL+SEG+KA+D+VC LP RIRRLE++A+   AK+A
Sbjct:  329 TAKDYADILEFLVGRWEVEKLTGLSSEGQKAQDYVCSLPPRIRRLEERAR-ERAKQA 384          
BLAST of FE659289 vs. ExPASy Swiss-Prot
Match: STAD_SOLTU (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.806e-15
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 3
Query:    3 TAKDYADILAFLIERWEVEKLMGLTSEGRKARDFVCGLPSRIRRLEDKAQA 155
            TAKDYADIL F + RWEVEKL GL+SEGR+A+D+VCGL  RIR+LE++AQA
Sbjct:  323 TAKDYADILEFHVGRWEVEKLTGLSSEGRRAQDYVCGLAPRIRKLEERAQA 373          
BLAST of FE659289 vs. ExPASy Swiss-Prot
Match: STAD_RICCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.478e-15
Identity = 38/57 (66.67%), Postives = 49/57 (85.96%), Query Frame = 3
Query:    3 TAKDYADILAFLIERWEVEKLMGLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKKA 173
            TAKDYADIL FL+ RW+V+KL GL++EG+KA+D+VC LP RIRRLE++AQ   AK+A
Sbjct:  326 TAKDYADILEFLVGRWKVDKLTGLSAEGQKAQDYVCRLPPRIRRLEERAQGR-AKEA 381          
BLAST of FE659289 vs. ExPASy Swiss-Prot
Match: STAD_CARTI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Carthamus tinctorius PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.478e-15
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 3
Query:    3 TAKDYADILAFLIERWEVEKLMGLTSEGRKARDFVCGLPSRIRRLEDKAQ 152
            TAKDYADIL FL+ RW+V  L GL+ EGRKA+D+VCGLP RIRRLE++AQ
Sbjct:  326 TAKDYADILEFLVGRWKVADLTGLSGEGRKAQDYVCGLPPRIRRLEERAQ 375          
BLAST of FE659289 vs. ExPASy Swiss-Prot
Match: STAD_CUCSA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.467e-14
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 3
Query:    3 TAKDYADILAFLIERWEVEKLMGLTSEGRKARDFVCGLPSRIRRLEDKAQ 152
            TAKDYADIL FL+ RW+VE L GL+ EG+KA+D+VC LP+RIR+LE++AQ
Sbjct:  326 TAKDYADILEFLVGRWKVESLTGLSGEGQKAQDYVCALPARIRKLEERAQ 375          
BLAST of FE659289 vs. ExPASy Swiss-Prot
Match: STAD_LINUS (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Linum usitatissimum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.177e-14
Identity = 36/56 (64.29%), Postives = 46/56 (82.14%), Query Frame = 3
Query:    3 TAKDYADILAFLIERWEVEKLMGLTSEGRKARDFVCGLPSRIRRLEDKAQANMAKK 170
            TAKDYADIL FL+ RW+V+   GL+ EG KA+DFVCGLP+RIR+LE++A A  AK+
Sbjct:  325 TAKDYADILEFLVGRWKVDAFTGLSGEGNKAQDFVCGLPARIRKLEERA-AGRAKQ 379          
BLAST of FE659289 vs. ExPASy Swiss-Prot
Match: STAD_GOSHI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.374e-14
Identity = 32/50 (64.00%), Postives = 45/50 (90.00%), Query Frame = 3
Query:    3 TAKDYADILAFLIERWEVEKLMGLTSEGRKARDFVCGLPSRIRRLEDKAQ 152
            TAKDY DI+  L++RW+V++L GL++EGRKA+D++C LPSRIRRLE++AQ
Sbjct:  326 TAKDYVDIVEHLVDRWKVKELAGLSAEGRKAQDYLCSLPSRIRRLEERAQ 375          
The following BLAST results are available for this feature:
BLAST of FE659289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
STAD_SOLCO1.545e-1668.42Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_OLEEU5.871e-1667.27Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOYBN7.668e-1663.16Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SPIOL1.308e-1570.18Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOLTU3.806e-1572.55Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_RICCO8.478e-1566.67Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CARTI8.478e-1572.00Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CUCSA2.467e-1468.00Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_LINUS7.177e-1464.29Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_GOSHI9.374e-1464.00Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]

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Properties
Property NameValue
Genbank description656 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659289 ID=FE659289; Name=FE659289; organism=Citrus sinensis; type=EST; length=178bp
ACACTGCCAAGGACTATGCTGATATCTTGGCGTTTCTGATTGAGAGATGG
GAAGTGGAGAAGTTGATGGGTCTTACAAGTGAAGGGCGTAAAGCTCGGGA
TTTTGTGTGTGGATTGCCTTCGAGGATTAGAAGATTGGAGGATAAAGCTC
AGGCAAATATGGCTAAGAAAGCGTGCAG
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