FE659175

Overview
NameFE659175
Unique NameFE659175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length327
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2163 contig Csv1_Contig2163:291..617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP1S2_DICDI (AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.985e-36
Identity = 68/88 (77.27%), Postives = 83/88 (94.32%), Query Frame = -2
Query:   63 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVE 326
            K+++KRYASLYF +C D+EDNEL +LEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDE+++AGELQE+SKKTV RLI+ QD+L+E
Sbjct:   57 KIIFKRYASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIMAGELQETSKKTVLRLISQQDTLLE 144          
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP1S2_MOUSE (AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.041e-31
Identity = 62/92 (67.39%), Postives = 74/92 (80.43%), Query Frame = -2
Query:   51 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKE 326
            K+VYKRYASLYFC  ++ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E AKE
Sbjct:   55 KIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEDAKE 146          
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP1S2_BOVIN (AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.041e-31
Identity = 62/92 (67.39%), Postives = 74/92 (80.43%), Query Frame = -2
Query:   51 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKE 326
            K+VYKRYASLYFC  ++ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E AKE
Sbjct:   55 KIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEDAKE 146          
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP1S2_HUMAN (AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.467e-30
Identity = 62/100 (62.00%), Postives = 76/100 (76.00%), Query Frame = -2
Query:   27 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNI 326
            K+VYKRYASLYFC  ++ +DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ GE+QE+SKK V + I   D L E A+   S +  I
Sbjct:   55 KIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEEAETPRSVLEEI 154          
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP1S3_MOUSE (AP-1 complex subunit sigma-3 OS=Mus musculus GN=Ap1s3 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.916e-30
Identity = 59/92 (64.13%), Postives = 74/92 (80.43%), Query Frame = -2
Query:   51 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKE 326
            K+VYKRYASLYFC  ++ +DNEL  LEI+H YVE+LD+YFG+VCELD+IFNF KAY+ILDE +I GE+QE+SKKT  + I   D L ET +E
Sbjct:   56 KLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEIQETSKKTAVKAIEDSDMLQETMEE 147          
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP1S3_HUMAN (AP-1 complex subunit sigma-3 OS=Homo sapiens GN=AP1S3 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.051e-28
Identity = 56/90 (62.22%), Postives = 71/90 (78.89%), Query Frame = -2
Query:   57 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETA 326
            K+VYKRYASLYFC  ++ +DNEL  LEI+H YVE+LD+YFG+VCELD+IFNF KAY+ILDE +I GE+QE+SKK   + I   D L E +
Sbjct:   56 KLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEIQETSKKIAVKAIEDSDMLQEVS 145          
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP1S1_MOUSE (AP-1 complex subunit sigma-1A OS=Mus musculus GN=Ap1s1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.373e-28
Identity = 58/100 (58.00%), Postives = 76/100 (76.00%), Query Frame = -2
Query:   27 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNI 326
            KVVYKRYASLYFC  ++ +DNEL  LE+IH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G++Q++SKK+V + I   D L E  +   S +  +
Sbjct:   56 KVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEM 155          
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP1S1_HUMAN (AP-1 complex subunit sigma-1A OS=Homo sapiens GN=AP1S1 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.373e-28
Identity = 58/100 (58.00%), Postives = 76/100 (76.00%), Query Frame = -2
Query:   27 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNI 326
            KVVYKRYASLYFC  ++ +DNEL  LE+IH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G++Q++SKK+V + I   D L E  +   S +  +
Sbjct:   56 KVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEM 155          
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP1S1_BOVIN (AP-1 complex subunit sigma-1A OS=Bos taurus GN=AP1S1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.373e-28
Identity = 58/100 (58.00%), Postives = 76/100 (76.00%), Query Frame = -2
Query:   27 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNI 326
            KVVYKRYASLYFC  ++ +DNEL  LE+IH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G++Q++SKK+V + I   D L E  +   S +  +
Sbjct:   55 KVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQEEDESPRSVLEEM 154          
BLAST of FE659175 vs. ExPASy Swiss-Prot
Match: AP1S1_SCHPO (AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe GN=SPAP27G11.06c PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.899e-28
Identity = 57/95 (60.00%), Postives = 75/95 (78.95%), Query Frame = -2
Query:   42 KVVYKRYASLYFCMCVDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQAS 326
            K+VY+RYASL+F   ++Q+DNEL ILE+IH +VE LD+YFG+VCELDLIFNF KAYY+++E+L+AGELQESSK  V   + A D+  E   +Q S
Sbjct:   57 KIVYRRYASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAGELQESSKTNVLSAVLAGDAESEADAQQDS 151          
The following BLAST results are available for this feature:
BLAST of FE659175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AP1S2_DICDI3.985e-3677.27AP-1 complex subunit sigma-2 OS=Dictyostelium disc... [more]
AP1S2_MOUSE5.041e-3167.39AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap... [more]
AP1S2_BOVIN5.041e-3167.39AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S... [more]
AP1S2_HUMAN1.467e-3062.00AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP... [more]
AP1S3_MOUSE1.916e-3064.13AP-1 complex subunit sigma-3 OS=Mus musculus GN=Ap... [more]
AP1S3_HUMAN1.051e-2862.22AP-1 complex subunit sigma-3 OS=Homo sapiens GN=AP... [more]
AP1S1_MOUSE1.373e-2858.00AP-1 complex subunit sigma-1A OS=Mus musculus GN=A... [more]
AP1S1_HUMAN1.373e-2858.00AP-1 complex subunit sigma-1A OS=Homo sapiens GN=A... [more]
AP1S1_BOVIN1.373e-2858.00AP-1 complex subunit sigma-1A OS=Bos taurus GN=AP1... [more]
AP1S1_SCHPO8.899e-2860.00AP-1 complex subunit sigma-1 OS=Schizosaccharomyce... [more]

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Properties
Property NameValue
Genbank description47 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659175 ID=FE659175; Name=FE659175; organism=Citrus sinensis; type=EST; length=327bp
ACATCCTACCTTGTGGCCTGTGCGATTATATTACTTATTGAACTAGCTTG
CTCTTTTGCAGTCTCCACCAGTGAATCCTGTGCAGCTATTAGCCGTGCGA
CTGTTTTCTTGCTGGACTCTTGAAGTTCGCCAGCAATCAAGATCTCATCC
AATATGTAATAAGCCTTGTGAAAGTTGAAGATGAGGTCCAACTCACAAAC
ACTGCCAAAGTATCTGTCAAGAATCTCAACATAATGATGAATTATTTCAA
GGATCTCTAACTCATTGTCTTCCTGATCAACGCACATGCAGAAGTATAGA
CTAGCATATCTTTTATAGACAACCTTG
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