FE659165

Overview
NameFE659165
Unique NameFE659165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length320
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12816 contig Csv1_Contig12816:728..1047. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659165 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.433e-14
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = -1
Query:  168 LLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRS-LKDKKK 320
            LL TVP+ Y+KYED+VDS+ EKA AE+KKQYAV DAKV SKIPR  LKDKKK
Sbjct:  219 LLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRGPLKDKKK 270          
BLAST of FE659165 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.987e-12
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = -1
Query:  168 LLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVL----SKIPRSLKDKKK 320
            LL T+PV+YEKYED+VD++ EKA  EIKKQYAV D KVL    SKIPR   +KKK
Sbjct:  202 LLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIPRGALNKKK 256          
BLAST of FE659165 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.692e-12
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = -1
Query:  168 LLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIP-RSLKDKKK 320
            +LHTVP++YEK+ED+VD  +EKA  E++KQY VFD KVLSKIP  SLK K K
Sbjct:  202 ILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKIPIASLKAKAK 253          
BLAST of FE659165 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.936e-11
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = -1
Query:  168 LLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRS-LKDKKK 320
            LL TVP+ Y+KYED+VD   EKA  E+KKQYAV D KVLSKIP   LK+KKK
Sbjct:  223 LLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKIPLGPLKNKKK 274          
BLAST of FE659165 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.358e-11
Identity = 30/42 (71.43%), Postives = 34/42 (80.95%), Query Frame = -1
Query:  195 LLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKI 320
            LL T+PV+YEKYED+VD F EKA  EIKKQY  FD KVLSK+
Sbjct:  198 LLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKV 239          
The following BLAST results are available for this feature:
BLAST of FE659165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RTNLB_ARATH1.433e-1475.00Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH2.987e-1265.45Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH8.692e-1265.38Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH1.936e-1167.31Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH7.358e-1171.43Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank description15 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659165 ID=FE659165; Name=FE659165; organism=Citrus sinensis; type=EST; length=320bp
ACAAAATATCCATATTGTGAACCCAACCACCTCTAGAACAACAAAGGAAT
AAAACAGGGTTCAAGCCAACACTGGATAACAGTTTCATAACACCTAGATA
AAATACTTTCTACCAAATGTGTGTCAGAACCTAGCAAAGACCGCAAATTT
ATACCACCATTCTAAGCCTTCTTCTTGTCCTTCAATGACCTTGGTATCTT
ACTTAAGACCTTGGCATCAAAGACTGCATACTGCTTCTTGATCTCAGCCC
ATGCCTTCTCAGAAAATGAATCCACCCGATCCTCATACTTCTCATATATC
ACAGGCACAGTGTGAAGCAG
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