FE659115

Overview
NameFE659115
Unique NameFE659115
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length501
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FE659115_ssr482 microsatellite FE659115_ssr482:482..491. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13614 contig Csv1_Contig13614:362..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659115 vs. ExPASy Swiss-Prot
Match: GSTX3_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 6.870e-14
Identity = 41/99 (41.41%), Postives = 56/99 (56.57%), Query Frame = 2
Query:    8 VMGAFASKGEEQEKAAK-ARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELL 301
            V+  F  KGEEQEK  +   E LK+L+  L+ K FF GDK GF DIA   +G W  + EE  GV L+ +E  P  + W + ++    +K  +PS  ELL
Sbjct:  107 VVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKKFFVGDKFGFADIAANLVGFWLGVFEEGYGVVLVTSEKFPNFSRWRDEYINCSQVKESLPSRDELL 205          
BLAST of FE659115 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.999e-13
Identity = 41/101 (40.59%), Postives = 54/101 (53.47%), Query Frame = 2
Query:    2 PEVMGAFASKGEEQEK-AAKARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELL 301
            P V+  F  KGEEQEK   +  E LK+L+  L+ K FF GDK GF DIA   +  W  + EE +GV L+ +E  P    W   ++    IK  +P   ELL
Sbjct:  105 PAVVKTFLRKGEEQEKDKEEVCEMLKVLDNELKDKKFFVGDKFGFADIAANLVAFWLGVFEEASGVVLVTSEKFPNFCKWRGEYINCSQIKESLPPRDELL 205          
BLAST of FE659115 vs. ExPASy Swiss-Prot
Match: GSTX2_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.886e-12
Identity = 38/99 (38.38%), Postives = 53/99 (53.54%), Query Frame = 2
Query:    8 VMGAFASKGEEQEKAAK-ARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELL 301
            V+  F  KGEEQEK  +   E LK+L+  L+ K FF GDK GF DIA   +G W  + EE  G  L+ +E  P  + W + ++    +   +P   ELL
Sbjct:  107 VVNTFFRKGEEQEKGKEEVYEMLKVLDNELKDKKFFAGDKFGFADIAANLVGFWLGVFEEGYGDVLVKSEKFPNFSKWRDEYINCSQVNESLPPRDELL 205          
BLAST of FE659115 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 35/102 (34.31%), Postives = 53/102 (51.96%), Query Frame = 2
Query:   35 EEQEKAAKARENLKMLERALEGKPFFGGDKIGFLDIAVGWIGIWGRIVEEIAGVSLIDAETMPLLTAWLNNFLEVPVIKACIPSWHELLEHNKGFRKILTGS 340
            E ++   +  E L+ LE  L+ K FFGG++ G +DIA  +I  W  I +EIAG+ L  +E  P+L  W   FL  P +   +P    L  + K   + L+ S
Sbjct:  123 EREKNVEETYEALQFLENELKDKKFFGGEEFGLVDIAAVFIAFWIPIFQEIAGLQLFTSEKFPILYKWSQEFLNHPFVHEVLPPRDPLFAYFKARYESLSAS 224          
The following BLAST results are available for this feature:
BLAST of FE659115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GSTX3_TOBAC6.870e-1441.41Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX1_TOBAC1.999e-1340.59Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX2_TOBAC2.886e-1238.38Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX6_SOYBN4.168e-1134.31Probable glutathione S-transferase OS=Glycine max ... [more]
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Properties
Property NameValue
Genbank descriptionC54 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659115 ID=FE659115; Name=FE659115; organism=Citrus sinensis; type=EST; length=501bp
ACCTGAAGTCATGGGAGCATTTGCCTCAAAAGGGGAGGAACAAGAGAAAG
CTGCAAAAGCTCGAGAGAATCTGAAGATGCTGGAAAGGGCTCTGGAGGGG
AAGCCCTTTTTTGGTGGTGACAAGATAGGCTTTCTGGACATTGCTGTGGG
GTGGATTGGAATCTGGGGTCGAATTGTTGAGGAAATTGCAGGTGTCAGCC
TGATTGATGCAGAGACGATGCCTTTGCTTACTGCTTGGTTGAACAATTTT
CTTGAAGTTCCTGTTATCAAAGCATGCATACCATCTTGGCACGAATTGCT
TGAGCACAATAAAGGCTTCCGCAAGATCTTGACAGGTTCATCAACTTGAA
GTCTCTACCATCATCAGCGGTTGCCCATGCATGAAGGTTTCTTAATATGA
TTTATAAATACTGCTTTTAGACTAAATATTATCATAAATAAGGCATGATC
CTTCATAGGTTTGTATGAATGTCTTCTAGACTATATATATATCATATATG
G
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