FE659076

Overview
NameFE659076
Unique NameFE659076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length305
Libraries
Library NameType
Hong Anliu sweet orange SSH librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12826 contig Csv1_Contig12826:1126..1430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FE659076 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.323e-20
Identity = 45/63 (71.43%), Postives = 55/63 (87.30%), Query Frame = -3
Query:  115 LSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 303
            L+ELAKKLP V FLKVDVDELK+VA EWAVE+MPTF+  KEGK+++++VGAKKDELQ  + KH
Sbjct:   50 LAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKH 112          
BLAST of FE659076 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.176e-20
Identity = 44/62 (70.97%), Postives = 54/62 (87.10%), Query Frame = -3
Query:  115 SELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 300
            +ELAKK+P V FLKVDVDELKSVA +WAVEAMPTF+  KEGK+++++VGAKKDELQ  + KH
Sbjct:   50 AELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKH 111          
BLAST of FE659076 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.506e-19
Identity = 42/62 (67.74%), Postives = 54/62 (87.10%), Query Frame = -3
Query:  115 SELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 300
            ++LAKKLP V+FLKVD DELKSVA +WA++AMPTF+  KEGK+L+++VGAKKDELQ  + KH
Sbjct:   51 ADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112          
BLAST of FE659076 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.761e-19
Identity = 42/63 (66.67%), Postives = 55/63 (87.30%), Query Frame = -3
Query:  115 LSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 303
            L+++AKK+P VIFLKVDVDELK+V+ EW+VEAMPTFV  K+GK ++R+VGAKK+ELQ  + KH
Sbjct:   56 LADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKH 118          
BLAST of FE659076 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.734e-16
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = -3
Query:  124 ELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAV 297
            EL+KK P + FLKVDVDEL+ VA+EW VEAMPTF+  K+GK ++++VGAKKD+L+  V
Sbjct:   50 ELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKV 107          
BLAST of FE659076 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.734e-16
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = -3
Query:  115 LSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 303
            +SELAKK P V F KVDVD+LK VAEE+ VEAMP+FV+ KEG+ +ERIVGA+KDEL   +  H
Sbjct:   49 VSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
BLAST of FE659076 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 6.547e-15
Identity = 38/62 (61.29%), Postives = 49/62 (79.03%), Query Frame = -3
Query:  115 SELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 300
            ++LAKK PA +FLKVDVDELK +AE+++VEAMPTF+  KEG V +R+VGA K+EL   V  H
Sbjct:   63 ADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLH 124          
BLAST of FE659076 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.551e-15
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = -3
Query:  115 SELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 300
            +E AKK P  +FLKVDVDELK VAE++ VEAMPTF+  K+G   +++VGA+KD+LQ  + KH
Sbjct:   51 AEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112          
BLAST of FE659076 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.551e-15
Identity = 36/62 (58.06%), Postives = 48/62 (77.42%), Query Frame = -3
Query:  115 SELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 300
            +E AKK P  +FLKVDVDELK VAE++ VEAMPTF+  K+G   +++VGA+KD+LQ  + KH
Sbjct:   51 AEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112          
BLAST of FE659076 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.459e-14
Identity = 35/62 (56.45%), Postives = 49/62 (79.03%), Query Frame = -3
Query:  115 SELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 300
            +E+AKK   V+F K+DVDEL++VA+E+ VEAMPTFV  KEG +++R+VGA KDE+   + KH
Sbjct:   50 AEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
The following BLAST results are available for this feature:
BLAST of FE659076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TRXH_RICCO2.323e-2071.43Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH2_TOBAC5.176e-2070.97Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_ARATH1.506e-1967.74Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH1_TOBAC9.761e-1966.67Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_PICMA7.734e-1662.07Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_FAGES7.734e-1665.08Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH_WHEAT6.547e-1561.29Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH_ORYSJ8.551e-1558.06Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI8.551e-1558.06Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH5_ARATH1.459e-1456.45Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]

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Properties
Property NameValue
Genbank descriptionC15 Hong Anliu sweet orange SSH library Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FE659076 ID=FE659076; Name=FE659076; organism=Citrus sinensis; type=EST; length=305bp
ACCATATTCTTACATTAAGCAACCACAAACACACACCTTACAATAAAAGA
CCAATGAGATTCATGTACGCATCAATCAAGCATTAGCAGTAGTTGCATTC
TCAACAGTTGTTGCGTGCTTTTCGACAGCCAGCTGCAGCTCATCTTTCTT
CGCTCCCACAATCCTCTCCAGGACTTTGCCTTCTTTCGTCAGTACAAAGG
TCGGCATGGCTTCCACAGCCCATTCCTCAGCGACAGACTTCAATTCATCA
ACATCCACCTTCAAGAATATGACAGCGGGCAGCTTCTTCGCCAATTCACT
CAAAA
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