EY720222

Overview
NameEY720222
Unique NameEY720222
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY720222_ssr570 microsatellite EY720222_ssr570:570..581. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY720222 vs. ExPASy Swiss-Prot
Match: M3K1_ARATH (Mitogen-activated protein kinase kinase kinase 1 OS=Arabidopsis thaliana GN=MEKK1 PE=1 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 2.776e-11
Identity = 36/81 (44.44%), Postives = 45/81 (55.56%), Query Frame = 2 
Query:  113 DITCANILVDASGSLKLAHLGLAKVXXXXXXXXXXXXXXXXXQYIRSCQATTMNDV*SCKGTEFWMAPDVVN-LNKDRYGA 352
            DI CANILVDA+G++KLA  GLAKV                         +  ND+ SCKGT FWMAP+V+N  + D YG+
Sbjct:  456 DIKCANILVDANGAVKLADFGLAKV-------------------------SKFNDIKSCKGTPFWMAPEVINRKDSDGYGS 511

HSP 2 Score: 26.9498 bits (58), Expect = 2.776e-11
Identity = 18/48 (37.50%), Postives = 23/48 (47.92%), Query Frame = 3 
Query:  348 GLPADIWNLGWNV*DMST---------PSPSLIPLGR---PPTNDNIS 455
            G PADIW+LG  V +M T         P  +L  +GR   P   D +S
Sbjct:  510 GSPADIWSLGCTVLEMCTGQIPYSDLEPVQALFRIGRGTLPEVPDTLS 557
The following BLAST results are available for this feature:
BLAST of EY720222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
M3K1_ARATH2.776e-1144.44Mitogen-activated protein kinase kinase kinase 1 O... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-703-003-F12-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720222 ID=EY720222; Name=EY720222; organism=Citrus sinensis; type=EST; length=937bp
TNNNNAACACCCCCGCGCCCCCCCTAACCTGGGTAAGCTTGCAGGGTCCG
GGTCCGGAATCCCCGGGTCACCACGCCGTCGCTTTAAATTTTGTTTCGTT
TCATTCCAAGGGGATATCACATGTGCAAATATATTGGTAGATGCTAGTGG
ATCACTAAAACTTGCACATCTTGGGTTGGCAAAGGTACTTAATCTCTCCC
CTTCTTTGTAAAACTCATGAATGCTACTGTATTTAATGCAATATATCCGA
TCTTGCCAGGCAACTACCATGAATGATGTCTAATCCTGCAAAGGAACAGA
ATTCTGGATGGCCCCTGATGTCGTGAATTTAAATAAGGACCGCTACGGGG
CTACCTGCTGATATATGGAACCTTGGGTGGAATGTATAGGACATGTCAAC
CCCGTCCCCATCCCTAATACCACTTGGAAGGCCGCCAACCAATGACAACA
TAAGCGCGCGCTAATAGCCCCCCCACCCGAACCTAATCCAAACACGCCCA
CCGCGCCCGCTCGAGCTGACCACGCACCAAACCACACGACCAACCCACGC
ACCCCCCACCCTCGGGCCACGCCGCCGCCGCACGCCGCGGCCCACCGCCC
CGCCCACCACCGGCCCGTCCGGCGCACCCCCACCCGCGCAGAAACCCGAC
CCCCCCCCCCCCCCAACCCCCACCCTCCCCCCACGGGCCCGCCCCGCGCC
CACCCCCCCCACCGCACCTCCACTACTCCACACAAACCCCCCCGCCCCCG
CGCCCGGCCCCCCCCCCCCTCCCCCAGCCACCCCGGCCCCGCCCCCGCAC
CCCGCGACCCGAACCGCCGCTTCTCCTGCCGCTGACACAGCCCCTCAAGG
CAACCCACAAACGAACCGACAACGTAGCTCCAGGCCGGGTGGCGCACGCC
CCCCCCATTCCGCCCCACCCCCCTCCACCTCCCCCGC
back to top