EY720221

Overview
NameEY720221
Unique NameEY720221
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY720221_ssr454 microsatellite EY720221_ssr454:454..465. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY720221 vs. ExPASy Swiss-Prot
Match: PSMD2_RAT (26S proteasome non-ATPase regulatory subunit 2 OS=Rattus norvegicus GN=Psmd2 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.436e-40
Identity = 85/220 (38.64%), Postives = 131/220 (59.55%), Query Frame = 2
Query:   44 DEASIDDLMELVQEIVAFHMKHNAEPXXXXXXXXXXXXXXXXXXXXATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLRFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCDILARHGITLELXXXXXXXXXXRYALQDLVNNVKLSEGYLTLARDIEVMEPKSPEDLYNAHLLDGR-ASAGASVDSPRQNLAATLVNAFVNARFGHDKFMT 700
            ++A  + L+ LV+EIV ++M HNAE                        + + CLYLTS   Y+P P++  +L  A  ++ +F  FP AL++AL L++M+ V+ IFTSC D++ +KQ   +L RHG+ LEL             L ++++NV+L+  +L LAR++++MEPK P+D+Y  HL + R   +G+ VDS R NLA++ VN FVNA FG DK +T
Sbjct:  177 EKAQREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYSKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVFLELSEDVEEYED----LTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGSQVDSARMNLASSFVNGFVNAAFGQDKLLT 392          
BLAST of EY720221 vs. ExPASy Swiss-Prot
Match: PSMD2_MOUSE (26S proteasome non-ATPase regulatory subunit 2 OS=Mus musculus GN=Psmd2 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.712e-40
Identity = 85/220 (38.64%), Postives = 131/220 (59.55%), Query Frame = 2
Query:   44 DEASIDDLMELVQEIVAFHMKHNAEPXXXXXXXXXXXXXXXXXXXXATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLRFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCDILARHGITLELXXXXXXXXXXRYALQDLVNNVKLSEGYLTLARDIEVMEPKSPEDLYNAHLLDGR-ASAGASVDSPRQNLAATLVNAFVNARFGHDKFMT 700
            ++A  + L+ LV+EIV ++M HNAE                        + + CLYLTS   Y+P P++  +L  A  ++ +F  FP AL++AL L++M+ V+ IFTSC D++ +KQ   +L RHG+ LEL             L ++++NV+L+  +L LAR++++MEPK P+D+Y  HL + R   +G+ VDS R NLA++ VN FVNA FG DK +T
Sbjct:  177 EKAQREPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVFLELSEDVEEYED----LTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGSQVDSARMNLASSFVNGFVNAAFGQDKLLT 392          
BLAST of EY720221 vs. ExPASy Swiss-Prot
Match: PSMD2_HUMAN (26S proteasome non-ATPase regulatory subunit 2 OS=Homo sapiens GN=PSMD2 PE=1 SV=3)

HSP 1 Score: 162.54 bits (410), Expect = 2.826e-39
Identity = 84/215 (39.07%), Postives = 128/215 (59.53%), Query Frame = 2
Query:   59 DDLMELVQEIVAFHMKHNAEPXXXXXXXXXXXXXXXXXXXXATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLRFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCDILARHGITLELXXXXXXXXXXRYALQDLVNNVKLSEGYLTLARDIEVMEPKSPEDLYNAHLLDGR-ASAGASVDSPRQNLAATLVNAFVNARFGHDKFMT 700
            + L+ LV+EIV ++M HNAE                        + + CLYLTS   Y+P P++  +L  A  ++ +F  FP AL++AL L++M+ V+ IFTSC D++ +KQ   +L RHG+ LEL             L ++++NV+L+  +L LAR++++MEPK P+D+Y  HL + R   +G+ VDS R NLA++ VN FVNA FG DK +T
Sbjct:  182 EPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVFLELSEDVEEYED----LTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGSQVDSARMNLASSFVNGFVNAAFGQDKLLT 392          
BLAST of EY720221 vs. ExPASy Swiss-Prot
Match: PSMD2_BOVIN (26S proteasome non-ATPase regulatory subunit 2 OS=Bos taurus GN=PSMD2 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 2.826e-39
Identity = 84/215 (39.07%), Postives = 128/215 (59.53%), Query Frame = 2
Query:   59 DDLMELVQEIVAFHMKHNAEPXXXXXXXXXXXXXXXXXXXXATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLRFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCDILARHGITLELXXXXXXXXXXRYALQDLVNNVKLSEGYLTLARDIEVMEPKSPEDLYNAHLLDGR-ASAGASVDSPRQNLAATLVNAFVNARFGHDKFMT 700
            + L+ LV+EIV ++M HNAE                        + + CLYLTS   Y+P P++  +L  A  ++ +F  FP AL++AL L++M+ V+ IFTSC D++ +KQ   +L RHG+ LEL             L ++++NV+L+  +L LAR++++MEPK P+D+Y  HL + R   +G+ VDS R NLA++ VN FVNA FG DK +T
Sbjct:  182 EPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVFLELSEDVEEYED----LTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGSQVDSARMNLASSFVNGFVNAAFGQDKLLT 392          
BLAST of EY720221 vs. ExPASy Swiss-Prot
Match: PSMD2_PONAB (26S proteasome non-ATPase regulatory subunit 2 OS=Pongo abelii GN=PSMD2 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.691e-39
Identity = 83/215 (38.60%), Postives = 128/215 (59.53%), Query Frame = 2
Query:   59 DDLMELVQEIVAFHMKHNAEPXXXXXXXXXXXXXXXXXXXXATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLRFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCDILARHGITLELXXXXXXXXXXRYALQDLVNNVKLSEGYLTLARDIEVMEPKSPEDLYNAHLLDGR-ASAGASVDSPRQNLAATLVNAFVNARFGHDKFMT 700
            + L+ LV+EI+ ++M HNAE                        + + CLYLTS   Y+P P++  +L  A  ++ +F  FP AL++AL L++M+ V+ IFTSC D++ +KQ   +L RHG+ LEL             L ++++NV+L+  +L LAR++++MEPK P+D+Y  HL + R   +G+ VDS R NLA++ VN FVNA FG DK +T
Sbjct:  182 EPLLTLVKEIIPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYVPEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGRHGVFLELSEDVEEYED----LTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGGSGSQVDSARMNLASSFVNGFVNAAFGQDKLLT 392          
BLAST of EY720221 vs. ExPASy Swiss-Prot
Match: PSMD2_DICDI (26S proteasome non-ATPase regulatory subunit 2 OS=Dictyostelium discoideum GN=psmD2 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.963e-34
Identity = 79/222 (35.59%), Postives = 127/222 (57.21%), Query Frame = 2
Query:   44 DEASIDDLMELVQEIVAFHMKHNAEPXXXXXXXXXXXXXXXXXXXXATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLRFEEFPNALQIALFLDNMQYVKQIFTSCDD---LLRKKQFCDILARHGITLELXXXXXXXXXXRYALQDLVNNVKLSEGYLTLARDIEVMEPKSPEDLYNAHLLDGRASAGASVDSPRQNLAATLVNAFVNARFGHDKFMT 700
            +  S++DL++LV EIV F M HNAEP                      N+ R CLYL   + Y+PGPDD+ +L +   IY++ +++P+AL++A+ + + + + +IF   ++   +L++  F  ++AR  I  +             ++ D++NN KLSE ++ LA D+++ EPK PE+++ +HL     S  A  DS R NLA++ VNAFVNA FG DK MT
Sbjct:  187 ENQSVEDLLKLVDEIVPFQMTHNAEPEACDLLLEVEQLSKIFQYIDENNYSRVCLYLFKCSYYVPGPDDINILKVCVEIYIKMKQYPDALRVAMKISDPELITEIFKLVENNKSILQQLGF--LVARQKIVPDNFNYD--------SISDIINNSKLSEYFMNLATDLDIREPKLPEEIFQSHL----DSTSAIADSARMNLASSFVNAFVNAGFGKDKLMT 394          
BLAST of EY720221 vs. ExPASy Swiss-Prot
Match: RPN1_SCHPO (26S proteasome regulatory subunit rpn1 OS=Schizosaccharomyces pombe GN=rpn1 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 9.735e-32
Identity = 81/221 (36.65%), Postives = 116/221 (52.49%), Query Frame = 2
Query:   38 QTDEASIDDLMELVQEIVAFHMKHNAEPXXXXXXXXXXXXXXXXXXXXATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLRFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCDILARHGITLELXXXXXXXXXXRYALQDLVNNVKLSEGYLTLARDIEVMEPKSPEDLYNAHLLDGRASAGAS-VDSPRQNLAATLVNAFVNARFGHDKFM 697
            Q +EA  DDLMEL   IV F + HNAE                       N  R CLY+TS    LP P+D+ +L  A+ IY +F++   AL +A+ LD+M  +K+   +  D L KKQ   +LAR  I +++             L D +NN  LS+ +  L +++ +M+PK PED++  HL   R   GAS V S +QNLA T VNA VNA + +D+ +
Sbjct:  177 QEEEAPTDDLMELALTIVPFFLTHNAEADAIDLLQELGAIEKVVPFVELDNASRVCLYITSCVNLLPFPEDVAMLRTAHAIYRKFDQLTQALNVAIRLDDMSLIKEDCEAATDPLLKKQMSYMLARQQIPMDMGDE---------ELNDALNNTHLSDHFHYLGKELNLMDPKVPEDIFKTHLEVARTGLGASGVYSAKQNLANTFVNALVNAGYSNDRLI 388          
BLAST of EY720221 vs. ExPASy Swiss-Prot
Match: RPN1_CANGA (26S proteasome regulatory subunit RPN1 OS=Candida glabrata GN=RPN1 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.718e-28
Identity = 73/219 (33.33%), Postives = 114/219 (52.05%), Query Frame = 2
Query:   47 EASIDDLMELVQEIVAFHMKHNAEPXXXXXXXXXXXXXXXXXXXXATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLRFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCDILARHGITLELXXXXXXXXXXRYALQDLVNNVKLSEGYLTLARDIEVMEPKSPEDLYNAHLLDGRA-SAGASVDSPRQNLAATLVNAFVNARFGHDKFMT 700
            E S D +++L  EIV + MKHN E                        +KR C Y+ +  + LP P+D+  L  AY IYL   + P AL +A+ L N   ++ +F +  D +  +Q   ILA   +  E              LQ+++ N KLSE +L LA+++ ++ PK PED+Y +HL   ++  + A +DS +QNLAA+ VNAF+N  + +DK +T
Sbjct:  192 EFSKDVILQLSLEIVPYFMKHNGEEDAVDLLLEIEAIEKLPQFVDENTYKRVCQYMIACVQLLPPPEDISFLQTAYSIYLSELQLPEALSLAIRLGNEDMIRSVFDATSDPIVHQQLAYILAAQRVPFE-----------HPELQEIIGNTKLSEHFLYLAKELNLLTPKIPEDIYKSHLDSSKSVFSSAGLDSAQQNLAASFVNAFLNLGYCNDKMIT 399          
BLAST of EY720221 vs. ExPASy Swiss-Prot
Match: RPN1_NEUCR (26S proteasome regulatory subunit rpn-1 OS=Neurospora crassa GN=rpn-1 PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 3.033e-25
Identity = 67/213 (31.46%), Postives = 109/213 (51.17%), Query Frame = 2
Query:   62 DLMELVQEIVAFHMKHNAEPXXXXXXXXXXXXXXXXXXXXATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLRFEEFPNALQIALFLDNMQYVKQIFTSCD-DLLRKKQFCDILARHGITLELXXXXXXXXXXRYALQDLVNNVKLSEGYLTLARDIEVMEPKSPEDLYNAHLLDGRASAGASVDSPRQNLAATLVNAFVNARFGHDKFM 697
            +L++L   +V   +K NAE                        + R CLY+ S    L  PD+   L +A+ IY ++ +   A+ +A+ L+++  +++ F + D D   +KQ   ++AR GI LE              + + ++N KLSE + +L +++ ++EPK+ ED+Y +HL   R +   + DS R NLAA  VNAFVNA FG DK M
Sbjct:  187 ELVDLALVLVPLFLKSNAEADAVDLMSELEIIEELPKFLDENTYSRVCLYMVSMVNLLTYPDNETFLRVAHSIYKKYNQHTQAMVLAIRLNDLGLIEKDFEAADEDPALRKQLAFLIARQGIPLEFERSNDDDEK----IYECLSNQKLSEYFKSLGKELNILEPKTTEDIYKSHLESSRVAGMTNFDSARHNLAAGFVNAFVNAGFGSDKMM 395          
BLAST of EY720221 vs. ExPASy Swiss-Prot
Match: RPN1_YEAST (26S proteasome regulatory subunit RPN1 OS=Saccharomyces cerevisiae GN=RPN1 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 5.174e-25
Identity = 67/218 (30.73%), Postives = 109/218 (50.00%), Query Frame = 2
Query:   47 EASIDDLMELVQEIVAFHMKHNAEPXXXXXXXXXXXXXXXXXXXXATNFKRTCLYLTSAAKYLPGPDDMLVLDIAYMIYLRFEEFPNALQIALFLDNMQYVKQIFTSCDDLLRKKQFCDILARHGITLELXXXXXXXXXXRYALQDLVNNVKLSEGYLTLARDIEVMEPKSPEDLYNAHLLDGRA-SAGASVDSPRQNLAATLVNAFVNARFGHDKFM 697
            E S +D + L  +IV + +KHN E                        F+R C Y+ +    LP P+D+  L  AY IYL   E  +A+ +A+ L     ++ +F +  D +  KQ   ILA    + E              +QD++ N KLSE +L LA+++ +  PK PED+Y +HL + ++  + A +DS +QNLA++ VN F+N  + +DK +
Sbjct:  194 EFSKEDTLRLCLDIVPYFLKHNGEEDAVDLLLEIESIDKLPQFVDENTFQRVCQYMVACVPLLPPPEDVAFLKTAYSIYLSQNELTDAIALAVRLGEEDMIRSVFDATSDPVMHKQLAYILAAQKTSFEYE-----------GVQDIIGNGKLSEHFLYLAKELNLTGPKVPEDIYKSHLDNSKSVFSSAGLDSAQQNLASSFVNGFLNLGYCNDKLI 400          
The following BLAST results are available for this feature:
BLAST of EY720221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PSMD2_RAT7.436e-4038.6426S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_MOUSE9.712e-4038.6426S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_HUMAN2.826e-3939.0726S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_BOVIN2.826e-3939.0726S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_PONAB3.691e-3938.6026S proteasome non-ATPase regulatory subunit 2 OS=... [more]
PSMD2_DICDI7.963e-3435.5926S proteasome non-ATPase regulatory subunit 2 OS=... [more]
RPN1_SCHPO9.735e-3236.6526S proteasome regulatory subunit rpn1 OS=Schizosa... [more]
RPN1_CANGA1.718e-2833.3326S proteasome regulatory subunit RPN1 OS=Candida ... [more]
RPN1_NEUCR3.033e-2531.4626S proteasome regulatory subunit rpn-1 OS=Neurosp... [more]
RPN1_YEAST5.174e-2530.7326S proteasome regulatory subunit RPN1 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-003-F11-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720221 ID=EY720221; Name=EY720221; organism=Citrus sinensis; type=EST; length=884bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGACAGACTGATGAGG
CCTCAATTGACGACTTAATGGAACTTGTTCAAGAAATTGTTGCTTTCCAC
ATGAAGCACAATGCTGAACCTGAAGCTGTTGATTTGTTGATGGAGGTCGA
AGACCTTGATCTGTTGGTTGAACATGTGGATGCTACGAATTTTAAGAGGA
CTTGTCTATACCTCACCAGTGCAGCAAAATACCTGCCTGGACCAGATGAC
ATGTTAGTTCTCGATATTGCATACATGATCTATCTCAGATTCGAAGAATT
TCCAAATGCACTTCAGATTGCATTATTCCTTGATAACATGCAGTATGTTA
AGCAAATCTTTACATCTTGCGATGATCTGTTGCGGAAGAAGCAATTCTGT
GACATACTTGCTCGACATGGTATCACGCTGGAGCTTGATGATGATATGGT
TCCTGATGATGATGACAGATATGCGCTGCAGGATCTCGTCAATAACGTGA
AACTAAGCGAAGGTTACCTTACCCTTGCTCGTGATATAGAGGTCATGGAA
CCAAAATCTCCTGAAGATCTCTACAACGCGCACTTGTTAGATGGGCGGGC
TAGTGCTGGTGCAAGTGTGGATTCACCCAGGCAGAACTTGGCTGCTACAT
TGGTGAATGCGTTTGTAAATGCTCGTTTCGGTCACGATAAGTTTATGACC
GGTCCATCCAATTCTTCAAGCGGGGGTTCTTCAGGAAACTGCCTTTGTAC
AATACACACCTGCGGAGATGAATGCCCCCCCAANGCTGGGGAGGATGTAT
TAGTGGATGGTGATTCTGGGGTGGCGCAATGGCCAGTGATTGCCGGGGGG
TGGTGTGGGGTGATGGCTGGACCACTTTCGAAGT
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