EY720211

Overview
NameEY720211
Unique NameEY720211
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY720211_ssr38 microsatellite EY720211_ssr38:38..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY720211 vs. ExPASy Swiss-Prot
Match: ODO2_MYCTU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Mycobacterium tuberculosis GN=sucB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.366e-14
Identity = 34/62 (54.84%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  415 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIHKLIANERDTVE 600
            +P +GES+T+GT+ ++LKQ GD VE+DEP+ ++ TDKV  ++ SP AGV+ K+IA E DTVE
Sbjct:    7 MPALGESVTEGTVTRWLKQEGDTVELDEPLVEVSTDKVDTEIPSPAAGVLTKIIAQEDDTVE 68          

HSP 2 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 30/68 (44.12%), Postives = 49/68 (72.06%), Query Frame = 1
Query:  394 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIHKLIANERDTV 597
            GD    ++P +GES+T+GT+ ++LK+ GD V++DEP+ ++ TDKV  ++ SP AGV+  + A+E  TV
Sbjct:  119 GDAKPVLMPELGESVTEGTVIRWLKKIGDSVQVDEPLVEVSTDKVDTEIPSPVAGVLVSISADEDATV 186          
BLAST of EY720211 vs. ExPASy Swiss-Prot
Match: ODO2_MYCBO (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Mycobacterium bovis GN=sucB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.366e-14
Identity = 34/62 (54.84%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  415 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIHKLIANERDTVE 600
            +P +GES+T+GT+ ++LKQ GD VE+DEP+ ++ TDKV  ++ SP AGV+ K+IA E DTVE
Sbjct:    7 MPALGESVTEGTVTRWLKQEGDTVELDEPLVEVSTDKVDTEIPSPAAGVLTKIIAQEDDTVE 68          

HSP 2 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 30/68 (44.12%), Postives = 49/68 (72.06%), Query Frame = 1
Query:  394 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIHKLIANERDTV 597
            GD    ++P +GES+T+GT+ ++LK+ GD V++DEP+ ++ TDKV  ++ SP AGV+  + A+E  TV
Sbjct:  119 GDAKPVLMPELGESVTEGTVIRWLKKIGDSVQVDEPLVEVSTDKVDTEIPSPVAGVLVSISADEDATV 186          
BLAST of EY720211 vs. ExPASy Swiss-Prot
Match: ODO2_STAS1 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=odhB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 35/62 (56.45%), Postives = 49/62 (79.03%), Query Frame = 1
Query:  415 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIHKLIANERDTVE 600
            VP + ESIT+GT+A++LKQ GD V+  E I ++ETDKV ++V S +AGV+ +L+ANE DTVE
Sbjct:    6 VPELAESITEGTIAEWLKQVGDSVDKGEAIVELETDKVNVEVVSEEAGVLQELLANEGDTVE 67          
BLAST of EY720211 vs. ExPASy Swiss-Prot
Match: ODO2_BARVB (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella vinsonii subsp. berkhofii GN=sucB PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.322e-12
Identity = 33/64 (51.56%), Postives = 49/64 (76.56%), Query Frame = 1
Query:  415 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIHKLIANERDTVETS 606
            VP +GES+T+ T+ K+ K+ G+ V IDEP+ ++ETDKVT++V SP AG + ++IA E DTVE +
Sbjct:    7 VPTLGESVTEATVGKWFKKLGEAVAIDEPLVELETDKVTVEVPSPVAGKLFEIIAKEGDTVEVN 70          
BLAST of EY720211 vs. ExPASy Swiss-Prot
Match: ODO2_BARQU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella quintana GN=sucB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 30/64 (46.88%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  415 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIHKLIANERDTVETS 606
            VP +GES+T+ T+ K+ K+ G+ V +DEP+ ++ETDKVT++V SP  G + ++IA E D VE +
Sbjct:    7 VPTLGESVTEATIGKWFKKLGEAVAVDEPLVELETDKVTVEVPSPVMGKLTEIIAKEGDIVEVN 70          
BLAST of EY720211 vs. ExPASy Swiss-Prot
Match: ODO2_STAAW (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MW2) GN=odhB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  415 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIHKLIANERDTVE 600
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S +AGV+ + +A+E DTVE
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVE 67          
BLAST of EY720211 vs. ExPASy Swiss-Prot
Match: ODO2_STAAS (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MSSA476) GN=odhB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  415 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIHKLIANERDTVE 600
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S +AGV+ + +A+E DTVE
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVE 67          
BLAST of EY720211 vs. ExPASy Swiss-Prot
Match: ODO2_STAAN (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain N315) GN=odhB PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  415 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIHKLIANERDTVE 600
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S +AGV+ + +A+E DTVE
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVE 67          
BLAST of EY720211 vs. ExPASy Swiss-Prot
Match: ODO2_STAAM (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=odhB PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  415 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIHKLIANERDTVE 600
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S +AGV+ + +A+E DTVE
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVE 67          
BLAST of EY720211 vs. ExPASy Swiss-Prot
Match: ODO2_STAAC (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain COL) GN=odhB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  415 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIHKLIANERDTVE 600
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S +AGV+ + +A+E DTVE
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVE 67          
The following BLAST results are available for this feature:
BLAST of EY720211 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ODO2_MYCTU5.366e-1454.84Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_MYCBO5.366e-1454.84Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAS11.012e-1256.45Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BARVB1.322e-1251.56Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BARQU3.256e-1146.88Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAW5.553e-1153.23Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAS5.553e-1153.23Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAN5.553e-1153.23Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAM5.553e-1153.23Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAC5.553e-1153.23Dihydrolipoyllysine-residue succinyltransferase co... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-003-E12-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720211 ID=EY720211; Name=EY720211; organism=Citrus sinensis; type=EST; length=882bp
CCACGCGTCCGGAGAAAGTTCTGTACATCGCAAGTCGTCTCTCTCTCTGA
GTCTTGTAAAATTATCTCAGATTCATTTTTATTCATTCACATCTAAAAAG
AAAAATAAATAAAGCACATAGTTTTTTCGGAAATGATTTGGGGAATTGTT
CGCCGCAAAATCACTTCGGCTCAAGTGATTGGACAATCAGTGTCAAAGAT
TGGGCCAAGATGTCACGCGACTGCGCAAAAGGAGGCTATACTCACTTGCA
GAGGTTTTCAGCGTGTTCAGCGTTCTAGCTATCACATTTTGTCAGGGAAT
TATGTTTGTTCGACGCCAAGAAGCGAAGTAATTGAGCTGATACAGAAAGG
ATCTTTTATTGGATCGAGAAGTAGATTGTTTTCTTCAGATAGTGGAGACC
TGGTTGATGCTGTTGTTCCCTTCATGGGTGAATCCATTACTGATGGAACA
TTGGCGAAGTTTTTGAAGCAACCTGGAGATAGAGTTGAAATTGATGAGCC
CATTGCTCAAATTGAAACCGATAAGGTGACAATTGATGTGGCTAGTCCTC
AAGCCGGTGTGATCCACAAGCTTATAGCCAACGAACGTGATACTGTGGAA
ACCAGTTGCACAGATTGCCGTTACTCCCACATCACGTGAAAGTGTGGGTC
AACCTGCTCCACCACAATAACGTGCAGCTCATACTCCACTGCTGTAGAAA
AGCCGTGTGTGGGGAAGCACACCCTGAAGTCGGCAGCGGCCCTGCAGTGG
AAGAGTGTCACCCTCTGAACCCCTTCCTAAAGCCAAAAACCTTGATGAGA
ATTCACACCCTGGTCTCCAACCCTCGCCTCCTCCCCCGGCAACAAAGACA
AGGCCCCCATGACAGACTTAGTGAATGGTCCC
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