EY720029

Overview
NameEY720029
Unique NameEY720029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720029 vs. ExPASy Swiss-Prot
Match: RSBQ_BACSU (Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis GN=rsbQ PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.072e-26
Identity = 57/116 (49.14%), Postives = 77/116 (66.38%), Query Frame = 2
Query:  131 EFLLEALNVRVVGQGQSIIVFSHGFGSDQSVWSRVIPSFTRAYRVISFDLMCSGSCDPTNYDFQRYATLDGYVDDLLSFLDALEIDRCAFVGHSVSAMIGLLTAIHRPNLFSRLIL 478
            E +L   +V+V G G++ I+F+ GFG DQSVW+ V P+F   +RVI FD + SG  D   YD  RY TLDGY  D+L   +AL++    FVGHSV A+IG+L +I RP LFS L++
Sbjct:    3 EAILSRNHVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVM 118          
The following BLAST results are available for this feature:
BLAST of EY720029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RSBQ_BACSU8.072e-2649.14Sigma factor sigB regulation protein rsbQ OS=Bacil... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-703-001-B01-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720029 ID=EY720029; Name=EY720029; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGCAACAATCAATATTAATTTCTTTCTAATCAAGTAATATA
TTTTCAATATTAATTTCGTTCACTCATAAATTAATTTTAATAAATTTGCT
ATTAAAATGGCCAACTACAATAACCGTGGCGAATTTCTCTTGGAAGCACT
AAATGTTCGAGTAGTAGGTCAAGGGCAGTCAATCATCGTGTTTTCCCACG
GATTTGGGTCTGACCAATCCGTATGGAGTCGCGTTATCCCTAGTTTCACC
CGTGCTTATCGTGTAATCAGCTTTGACCTAATGTGCTCAGGAAGCTGCGA
CCCAACAAATTATGATTTCCAAAGATACGCCACTCTTGATGGTTACGTTG
ATGACTTGCTCAGCTTTCTCGACGCCCTTGAAATTGATCGTTGCGCCTTT
GTTGGTCATTCAGTATCGGCTATGATTGGTCTCTTAACCGCCATTCACCG
TCCCAACCTTTTCTCAAGACTCATTCTCCATTGGCGGGTCTCCAAGGGTC
ACAAATGATTGGAAAATATATTGGGGGGTATTGACCAGCTCAAATGGAAA
AAATGTCCCCAAAATTGTAAAACAATTTATCAATCCTGGGGCCAAGGATT
TGTACCAATGGAACTTGGTGCGGAAAGTCCCTAAATTGGTTCTCCAAAAA
ATTCACAAGAAATTTTGTTAACCTAGAAGGCCTAAAATTTCCCTTGGAAT
TTCCAAAAAAAAAAGTTTGTAATTTTACCCAAAAGGATTGTTTGGGGTCC
TGTTTTAAGGGTCCCCATTTTAAAAACATAAAAACCCTCGGGATATGTGG
TAGACCCCACAAAGGTTTCCGAAAAATAAAATAAACCCCTATCTTGGGGG
CCCCACTTTGCTTAATATTTTTCCTCGCATCCTCCAATT
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