EY720028

Overview
NameEY720028
Unique NameEY720028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11146 contig Csv1_Contig11146:1..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY720028 vs. ExPASy Swiss-Prot
Match: AMY3_HORVU (Alpha-amylase type B isozyme (Fragment) OS=Hordeum vulgare GN=AMY1.3 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.343e-31
Identity = 75/182 (41.21%), Postives = 108/182 (59.34%), Query Frame = 1
Query:  295 LGAVIRNGREILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP----LSWDEHAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWVRNTVGF 807
            L A + +G ++LFQGFNWES KH+  W+  L  KV DI+ +G T VWLPPA+ S A +GY+P  LY L++S YG++  LK+L+  +    V+A+ADIVINHR    +   G Y  ++G+     L W  H +         G GN  TG +F   P+IDH    V+K++  WL W++  +GF
Sbjct:   17 LSASLASG-QVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGITHVWLPPASQSVAEQGYMPGRLYDLDASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGVTPDARLDWGPHMICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELAEWLNWLKADIGF 197          
BLAST of EY720028 vs. ExPASy Swiss-Prot
Match: AMY2_HORVU (Alpha-amylase type B isozyme OS=Hordeum vulgare GN=AMY1.2 PE=1 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.754e-31
Identity = 75/182 (41.21%), Postives = 108/182 (59.34%), Query Frame = 1
Query:  295 LGAVIRNGREILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG----IPLSWDEHAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWVRNTVGF 807
            L A + +G ++LFQGFNWES KH+  W+  L  KV DI+ +G T VWLPPA+ S A +GY+P  LY L++S YG++  LK+L+  +    V+A+ADIVINHR    +   G Y  ++G      L W  H +         G GN  TG +F   P+IDH    V+K+++ WL W++  +GF
Sbjct:   17 LSASLASG-QVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGITHVWLPPASQSVAEQGYMPGRLYDLDASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGGTPDARLDWGPHMICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGF 197          
BLAST of EY720028 vs. ExPASy Swiss-Prot
Match: AMY3_WHEAT (Alpha-amylase AMY3 OS=Triticum aestivum GN=AMY1.1 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.907e-31
Identity = 71/177 (40.11%), Postives = 102/177 (57.63%), Query Frame = 1
Query:  322 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSSYGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG----IPLSWDEHAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWVRNTVGFQDFVL 822
            +ILFQGFNWES K    W++ ++ KV +I+ +G T VWLPP + S +PEGYLP  LY+LNS YGS   LK+L+   +   +  +ADIVINHR    +   G Y  ++G      L W    +    T  + G G+  TG  F   P+IDH    V++++ AWL W++  +GF  + L
Sbjct:   26 QILFQGFNWESWKTQGGWYKFMQGKVEEIASTGATHVWLPPPSQSVSPEGYLPGQLYNLNSKYGSGADLKSLIQAFRGKNISCVADIVINHRCADKKDGRGVYCIFEGGTSDNRLDWGPDEICSDDTKYSNGRGHRDTGGGFDAAPDIDHLNPRVQRELSAWLNWLKTDLGFDGWRL 202          
BLAST of EY720028 vs. ExPASy Swiss-Prot
Match: AMYA_VIGMU (Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.103e-31
Identity = 75/204 (36.76%), Postives = 117/204 (57.35%), Query Frame = 1
Query:  325 ILFQGFNWESCKHD-WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYD-GIPLS---WDEHAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWVRNTVGFQ----DFVLILQELLSK-YVKDTLKEHANISCW 891
            +LFQGFNWES K   W+ +L+  +PD++ +G T VWLPP + S +PEGYLP  LY L++S YGS++ LK+L+    +  ++ +ADIVINHR    +   G Y  ++ G P S   W    +    T+ + G GN  +G+ +   P+IDH    V++++  W+ W++  +GF     DFV      +SK Y++ T  + A    W
Sbjct:   25 LLFQGFNWESSKKGGWYNSLKNSIPDLANAGITHVWLPPPSQSVSPEGYLPGRLYDLDASKYGSKNELKSLIAAFHEKGIKCLADIVINHRTAERKDGRGIYCIFEGGTPDSRQDWGPSFICRDDTAYSDGTGNNDSGEGYDAAPDIDHLNPQVQRELSEWMNWLKTEIGFDGWRFDFVKGYAPSISKIYMEQTKPDFAVGEKW 228          
BLAST of EY720028 vs. ExPASy Swiss-Prot
Match: AMY3A_ORYSJ (Alpha-amylase isozyme 3A OS=Oryza sativa subsp. japonica GN=AMY1.2 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 8.704e-31
Identity = 76/199 (38.19%), Postives = 111/199 (55.78%), Query Frame = 1
Query:  322 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP----LSWDEHAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWVRNTVGFQDFVLILQELLSKYVKDTLKEHANIS 885
            +ILFQGFNW+S K    W+  L+ +V DI+ +G T VWLPP THS +P+GY+P  LY LN+S YG++  LK+L+       ++ +ADIV+NHR    +   G Y  + G      L W    +    T  + G G+  TG +F   P+IDH    V++++  WLRW+R  VGF  + L   +  S  V  T  ++A  S
Sbjct:   29 QILFQGFNWDSWKKQGGWYNMLKDQVGDIASAGVTHVWLPPPTHSVSPQGYMPGRLYDLNASKYGTKAELKSLIAAFHAKGIKCVADIVVNHRCADDKDGRGVYCIFKGGGPRGCLDWGPSMICCDDTQYSDGTGHRDTGADFAAAPDIDHLNPLVQRELSDWLRWLRRDVGFDGWRLDFAKGYSAAVARTYVQNARPS 227          
BLAST of EY720028 vs. ExPASy Swiss-Prot
Match: AMY3D_ORYSJ (Alpha-amylase isozyme 3D OS=Oryza sativa subsp. japonica GN=AMY1.3 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 5.642e-30
Identity = 70/178 (39.33%), Postives = 104/178 (58.43%), Query Frame = 1
Query:  322 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG----IPLSWDEHAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWVRNTVGFQDFVL 822
            ++LFQGFNWES K    W+  L+ +V DI+K+G T VWLPP +HS AP+GY+P  LY L++S YG+   LK+L+       V+ +AD+VINHR    +   G Y  ++G      L W    +    T  + G G+  TG+ F   P+IDH    V++++  WL W+++ VGF  + L
Sbjct:   26 QVLFQGFNWESWKQQGGWYNMLKGQVDDIAKAGVTHVWLPPPSHSVAPQGYMPGRLYDLDASKYGTAAELKSLIAAFHGKGVQCVADVVINHRCAEKKDARGVYCVFEGGTPDDRLDWGPGMICSDDTQYSDGTGHRDTGEGFGAAPDIDHLNPRVQRELTDWLNWLKSDVGFDGWRL 203          
BLAST of EY720028 vs. ExPASy Swiss-Prot
Match: AMY1_ORYSJ (Alpha-amylase OS=Oryza sativa subsp. japonica GN=AMY1.1 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 7.368e-30
Identity = 70/172 (40.70%), Postives = 99/172 (57.56%), Query Frame = 1
Query:  322 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG----IPLSWDEHAV---TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWVRNTVGF 807
            ++LFQGFNWES K +  W+  L  KV DI+ +G T VWLPP +HS   +GY+P  LY L++S YG+E  LK+L+       V+ +ADIVINHR    +   G Y  ++G      L W  H +        G GN  TG +F   P+IDH    V++++I WL W++  +GF
Sbjct:   32 QVLFQGFNWESWKENGGWYNFLMGKVDDIAAAGITHVWLPPPSHSVGEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDPYGDGTGNPDTGADFAAAPDIDHLNKRVQRELIGWLDWLKMDIGF 203          
BLAST of EY720028 vs. ExPASy Swiss-Prot
Match: AMY3E_ORYSJ (Alpha-amylase isozyme 3E OS=Oryza sativa subsp. japonica GN=AMY1.4 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.641e-29
Identity = 69/178 (38.76%), Postives = 100/178 (56.18%), Query Frame = 1
Query:  322 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP----LSWDEHAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWVRNTVGFQDFVL 822
            ++LFQGFNWES +    W+  L  KV +I+ +G T VWLPP +HS +P+GY+P  LY L++S YG+E  LK+L+       V  +ADIVINHR    +   G Y  ++G      L W    +    T  + G G+  TG  F   P+IDH    V++++  WL W+R  +GF  + L
Sbjct:   26 QVLFQGFNWESWRKQGGWYNFLHEKVEEIASTGATHVWLPPPSHSVSPQGYMPGRLYDLDASKYGTEAELKSLIEAFHDKNVECLADIVINHRCADYKDSRGVYCVFEGGTPDGRLDWGPDMICSDDTQYSNGRGHRDTGAGFGAAPDIDHLNPRVQRELTDWLNWLRTDLGFDGWRL 203          
BLAST of EY720028 vs. ExPASy Swiss-Prot
Match: AMY1_HORVU (Alpha-amylase type A isozyme OS=Hordeum vulgare GN=AMY1.1 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.641e-29
Identity = 76/213 (35.68%), Postives = 114/213 (53.52%), Query Frame = 1
Query:  301 AVIRNGREILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDGIP----LSWDEHAV----TSCTGGLGNGSTGDNFHGVPNIDHTQHFVRKDIIAWLRWVRNTVGFQDFVL-----ILQELLSKYVKDTLKEHANISCW 891
            A + +G ++LFQGFNWES K    W+  +  KV DI+ +G T VWLPP +HS + EGY+P  LY +++S YG+   LK+L+  +    V+A+ADIVINHR    +   G Y  ++G      L W  H +    T  + G  N  TG +F   P+IDH    V++++  WL W+++ +GF  + L        E+   Y+  T    A    W
Sbjct:   19 AGLASGHQVLFQGFNWESWKQSGGWYNMMMGKVDDIAAAGVTHVWLPPPSHSVSNEGYMPGRLYDIDASKYGNAAELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIYCIFEGGTSDGRLDWGPHMICRDDTKYSDGTANLDTGADFAAAPDIDHLNDRVQRELKEWLLWLKSDLGFDAWRLDFARGYSPEMAKVYIDGTSPSLAVAEVW 231          
BLAST of EY720028 vs. ExPASy Swiss-Prot
Match: AMY6_HORVU (Alpha-amylase type B isozyme OS=Hordeum vulgare GN=AMY1.6 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 8.146e-29
Identity = 72/175 (41.14%), Postives = 101/175 (57.71%), Query Frame = 1
Query:  322 EILFQGFNWESCKHD--WWRNLERKVPDISKSGFTSVWLPPATHSFAPEGYLPQNLYSLNSS-YGSEHLLKALLHKMKQHKVRAMADIVINHRVGTTQGHGGKYNRYDG----IPLSWDEHAV----TSCTGGLGNGSTGD--NFHGVPNIDHTQHFVRKDIIAWLRWVRNTVGF 807
            ++LFQGFNWES KH+  W+  L  KV DI+ +G T VWLPPA+ S A +GY+P  LY L++S YG++  LK+L+  +    V+A+ADIVINHR    +   G Y  ++G      L W  H +         G GN  T    +F   P+IDH    V+K+++ WL W+R   GF
Sbjct:   25 QVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGVTHVWLPPASQSVAEQGYMPGRLYDLDASKYGNKAQLKSLIGALHGKAVKAIADIVINHRTAERKDGRGIYCIFEGGTPDARLDWGPHMICRDDRPYPDGTGNRPTRTRADFGAAPDIDHLNPRVQKELVEWLNWLRTDDGF 199          
The following BLAST results are available for this feature:
BLAST of EY720028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
AMY3_HORVU1.343e-3141.21Alpha-amylase type B isozyme (Fragment) OS=Hordeum... [more]
AMY2_HORVU1.754e-3141.21Alpha-amylase type B isozyme OS=Hordeum vulgare GN... [more]
AMY3_WHEAT3.907e-3140.11Alpha-amylase AMY3 OS=Triticum aestivum GN=AMY1.1 ... [more]
AMYA_VIGMU5.103e-3136.76Alpha-amylase OS=Vigna mungo GN=AMY1.1 PE=2 SV=1[more]
AMY3A_ORYSJ8.704e-3138.19Alpha-amylase isozyme 3A OS=Oryza sativa subsp. ja... [more]
AMY3D_ORYSJ5.642e-3039.33Alpha-amylase isozyme 3D OS=Oryza sativa subsp. ja... [more]
AMY1_ORYSJ7.368e-3040.70Alpha-amylase OS=Oryza sativa subsp. japonica GN=A... [more]
AMY3E_ORYSJ1.641e-2938.76Alpha-amylase isozyme 3E OS=Oryza sativa subsp. ja... [more]
AMY1_HORVU1.641e-2935.68Alpha-amylase type A isozyme OS=Hordeum vulgare GN... [more]
AMY6_HORVU8.146e-2941.14Alpha-amylase type B isozyme OS=Hordeum vulgare GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-001-A12-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720028 ID=EY720028; Name=EY720028; organism=Citrus sinensis; type=EST; length=914bp
CCACGCGTCCGCGGACGCGTGGGCTAATATTCTCTCTCTTTATCGCCTTT
TCATTTCATGGATGAAACTTTGTGATTCTGATTCCATTCATGTGGACTCC
GCCCGCCACTTCTTCCATCTCTATGACTATTTATATCGGCTAACGTATTA
GCGCTAACCTACGCTGCGATCCCAACTTACTTTTTTGATTATCTCGGTGC
TTTATTTCCTGCGATCCAGCGTCAGACGGCTACCCCTTGAGTTGATATGG
ATTACACGAGCAAGGGTTTTGATGAAACTAACCAGCAAACTGATCTTGGT
GCGGTTATACGCAATGGACGAGAAATTCTGTTTCAGGGTTTCAATTGGGA
GTCTTGCAAACATGATTGGTGGAGAAATTTAGAAAGGAAAGTTCCCGACA
TTTCAAAATCTGGGTTCACATCAGTGTGGTTGCCTCCTGCAACTCATTCC
TTTGCACCTGAAGGTTACCTACCACAGAACCTTTATTCCCTTAATTCTTC
ATATGGCTCTGAACACCTGTTAAAAGCTTTACTTCATAAAATGAAACAGC
ACAAAGTCAGGGCAATGGCTGACATAGTTATCAATCATCGTGTTGGTACT
ACCCAAGGGCATGGTGGAAAGTATAATCGTTATGATGGGATACCATTATC
ATGGGATGAACATGCAGTTACATCTTGTACCGGTGGTTTGGGTAATGGAA
GCACTGGGGACAACTTTCATGGTGTTCCAAATATTGACCATACCCAACAC
TTTGTACGGAAAGACATTATAGCATGGCTGCGGTGGGTACGCAACACTGT
GGGCTTTCAAGATTTCGTTTTGATTTTGCAAGAGTTACTCAGCAAATATG
TGAAAGATACATTGAAGGAGCACGCCAATATTTCTTGTTGGGGATACTGG
GACCCTTGCACTAC
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