EY749276

Overview
NameEY749276
Unique NameEY749276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length985
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY749276 vs. ExPASy Swiss-Prot
Match: EIF3F_ARATH (Eukaryotic translation initiation factor 3 subunit F OS=Arabidopsis thaliana GN=TIF3F1 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 4.584e-72
Identity = 126/172 (73.26%), Postives = 146/172 (84.88%), Query Frame = 1
Query:   58 AASDRTVLQF----GPSSAVTSNITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFKNGEGTVKAYVSVNLSLGDRKLAAQFQENPL 561
            A S+ T+LQF      +SA TS +TA++HPLVIFN+ DC+VRRPD AERVIGTLLGS+LPDGTVDIRNSY VPHNE SDQVA+DI+YHH ML SHLKVN +E IVGW+STG GV GGS+LIH+FY REVPNP+HLTVDTGF NGEGT+KA+VS NLSLGDR+L A FQE P+
Sbjct:    3 ATSEHTILQFVSPSSTASATTSVLTARIHPLVIFNVCDCFVRRPDSAERVIGTLLGSILPDGTVDIRNSYAVPHNESSDQVAVDIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIHDFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSNLSLGDRQLVAHFQEIPV 174          

HSP 2 Score: 28.4906 bits (62), Expect = 4.584e-72
Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 3
Query:  606 DILKSTSVDKLPKGLE 653
            D+LK+TSVDKLP  LE
Sbjct:  187 DVLKATSVDKLPNDLE 202          
BLAST of EY749276 vs. ExPASy Swiss-Prot
Match: EIF3F_PANTR (Eukaryotic translation initiation factor 3 subunit F OS=Pan troglodytes GN=EIF3F PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.094e-33
Identity = 67/141 (47.52%), Postives = 98/141 (69.50%), Query Frame = 1
Query:  124 KVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFKNGEGTVKAYVSVNLSLGDRKLAAQF 546
            ++HP+++ +I D Y RR + A RVIGTLLG+V    +V++ N + VPHNE  D+VA+D+E+   M + H KV+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDT  +NG  ++KAYVS  + +  R +   F
Sbjct:   97 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMF 236          
BLAST of EY749276 vs. ExPASy Swiss-Prot
Match: EIF3F_MACFA (Eukaryotic translation initiation factor 3 subunit F OS=Macaca fascicularis GN=EIF3F PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.094e-33
Identity = 67/141 (47.52%), Postives = 98/141 (69.50%), Query Frame = 1
Query:  124 KVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFKNGEGTVKAYVSVNLSLGDRKLAAQF 546
            ++HP+++ +I D Y RR + A RVIGTLLG+V    +V++ N + VPHNE  D+VA+D+E+   M + H KV+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDT  +NG  ++KAYVS  + +  R +   F
Sbjct:   97 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMF 236          
BLAST of EY749276 vs. ExPASy Swiss-Prot
Match: EIF3F_HUMAN (Eukaryotic translation initiation factor 3 subunit F OS=Homo sapiens GN=EIF3F PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.094e-33
Identity = 67/141 (47.52%), Postives = 98/141 (69.50%), Query Frame = 1
Query:  124 KVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFKNGEGTVKAYVSVNLSLGDRKLAAQF 546
            ++HP+++ +I D Y RR + A RVIGTLLG+V    +V++ N + VPHNE  D+VA+D+E+   M + H KV+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDT  +NG  ++KAYVS  + +  R +   F
Sbjct:   93 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSREAPNPIHLTVDTSLQNGRMSIKAYVSTLMGVPGRTMGVMF 232          
BLAST of EY749276 vs. ExPASy Swiss-Prot
Match: EIF3F_MOUSE (Eukaryotic translation initiation factor 3 subunit F OS=Mus musculus GN=Eif3f PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.735e-33
Identity = 67/141 (47.52%), Postives = 99/141 (70.21%), Query Frame = 1
Query:  124 KVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFKNGEGTVKAYVSVNLSLGDRKLAAQF 546
            ++HP+++ +I D Y RR + A RVIGTLLG+V    +V++ N + VPHNE  D+VA+D+E+   M + H KV+P E+I+GW++TG  +T  S LIHE+Y RE PNP+HLTVDTG ++G  ++KAYVS  + +  R +   F
Sbjct:   97 RLHPVILASIVDSYERRNEGAARVIGTLLGTV-DKHSVEVTNCFSVPHNESEDEVAVDMEFAKNMYELHKKVSPNELILGWYATGHDITEHSVLIHEYYSRESPNPIHLTVDTGLQHGRMSIKAYVSTLMGVPGRTMGVMF 236          
BLAST of EY749276 vs. ExPASy Swiss-Prot
Match: EI3F1_DROAN (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila ananassae GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.158e-32
Identity = 69/150 (46.00%), Postives = 93/150 (62.00%), Query Frame = 1
Query:  112 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFKNGEGTVKAYVSVNLSLGDRKLAAQFQENPL 561
            N+T +VHP+V+F + D Y RR   + RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVNP E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   ++AYV + L +   K    F   P+
Sbjct:    5 NLTVRVHPVVLFQVVDAYERRNADSHRVIGTLLGSV-DKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNPNESVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRAYVCIQLGVPGGKSGCMFTPIPV 153          
BLAST of EY749276 vs. ExPASy Swiss-Prot
Match: EIF3F_AEDAE (Eukaryotic translation initiation factor 3 subunit F OS=Aedes aegypti GN=eIF3-S5 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.343e-31
Identity = 68/145 (46.90%), Postives = 92/145 (63.45%), Query Frame = 1
Query:  112 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFKNGEGTVKAYVSVNLSLGDRKLAAQF 546
            N+T +VHP+V+F I D Y RR   +ERVIGTLLGSV   G V++ N + VPH E +DQV  ++ Y   +   + +VNP E IVGW++TG  VT  S++IHE+Y RE  NP+HLT+DT        +KAYV V+L +   K    F
Sbjct:    9 NLTVRVHPVVLFQIVDAYERRNADSERVIGTLLGSV-DKGVVEVTNCFCVPHKEHADQVEAELGYASDLYDLNRRVNPSENIVGWWATGQEVTNHSSVIHEYYARECNNPIHLTLDTSLSAARMGIKAYVCVSLGVPGGKTGCMF 152          
BLAST of EY749276 vs. ExPASy Swiss-Prot
Match: EIF3F_CULQU (Eukaryotic translation initiation factor 3 subunit F OS=Culex quinquefasciatus GN=eIF3-S5 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 5.703e-31
Identity = 68/145 (46.90%), Postives = 92/145 (63.45%), Query Frame = 1
Query:  112 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFKNGEGTVKAYVSVNLSLGDRKLAAQF 546
            N+T +VHP+V+F I D Y RR   +ERVIGTLLGSV   G V++ N + VPH E +DQV  ++ Y   +   + +VNP E IVGW++TG  VT  S++IHE+Y RE  NP+HLT+DT        +KAYV V+L +   K    F
Sbjct:    9 NLTVRVHPVVLFQIVDAYERRNADSERVIGTLLGSV-EKGIVEVTNCFCVPHKEHADQVEAELGYASDLYDLNRRVNPSENIVGWWATGQEVTNHSSVIHEYYARECNNPIHLTLDTSLTAARMGIKAYVCVSLGVPGGKTGCMF 152          
BLAST of EY749276 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPS (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila pseudoobscura pseudoobscura GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 7.448e-31
Identity = 66/150 (44.00%), Postives = 93/150 (62.00%), Query Frame = 1
Query:  112 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFKNGEGTVKAYVSVNLSLGDRKLAAQFQENPL 561
            N+T +VHP+V+F + D + RR  ++ RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   +++YV + L +   K    F   P+
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNAESHRVIGTLLGSV-EKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGGKTGCMFTPIPV 153          
BLAST of EY749276 vs. ExPASy Swiss-Prot
Match: EI3F1_DROPE (Eukaryotic translation initiation factor 3 subunit F-1 OS=Drosophila persimilis GN=eIF3-S5-1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 7.448e-31
Identity = 66/150 (44.00%), Postives = 93/150 (62.00%), Query Frame = 1
Query:  112 NITAKVHPLVIFNISDCYVRRPDQAERVIGTLLGSVLPDGTVDIRNSYVVPHNEFSDQVALDIEYHHTMLKSHLKVNPQEVIVGWFSTGLGVTGGSALIHEFYCREVPNPVHLTVDTGFKNGEGTVKAYVSVNLSLGDRKLAAQFQENPL 561
            N+T +VHP+V+F + D + RR  ++ RVIGTLLGSV   G V++ N + VPH E  DQV  ++ Y   M   + KVN  E +VGW++TG  VT  S++IHE+Y RE  NPVHLTVDT  + G   +++YV + L +   K    F   P+
Sbjct:    5 NLTVRVHPVVLFQVVDAFERRNAESHRVIGTLLGSV-EKGVVEVTNCFCVPHKEHDDQVEAELSYALDMYDLNRKVNSNEAVVGWWATGNDVTNHSSVIHEYYARECNNPVHLTVDTSLQGGRMGLRSYVCIQLGVPGGKTGCMFTPIPV 153          
The following BLAST results are available for this feature:
BLAST of EY749276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EIF3F_ARATH4.584e-7273.26Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_PANTR2.094e-3347.52Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MACFA2.094e-3347.52Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_HUMAN2.094e-3347.52Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_MOUSE2.735e-3347.52Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROAN5.158e-3246.00Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_AEDAE3.343e-3146.90Eukaryotic translation initiation factor 3 subunit... [more]
EIF3F_CULQU5.703e-3146.90Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROPS7.448e-3144.00Eukaryotic translation initiation factor 3 subunit... [more]
EI3F1_DROPE7.448e-3144.00Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-072-A08-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY749276 ID=EY749276; Name=EY749276; organism=Citrus sinensis; type=EST; length=985bp
CCACGCGTCCGCTCTTTGCTTTTTGAGTCGAGATCAGAAGAGAAGAAGAT
AAGAATGGCGGCAAGCGACCGCACGGTGCTGCAATTCGGACCTTCATCAG
CGGTGACGTCGAATATAACGGCGAAAGTTCACCCGCTGGTTATTTTCAAC
ATCTCCGACTGTTACGTCAGACGCCCCGACCAAGCTGAACGCGTCATCGG
CACGCTTCTTGGCTCCGTTTTGCCTGATGGCACCGTCGATATCCGTAACT
CCTACGTCGTTCCTCACAACGAGTTCTCCGATCAGGTTGCATTGGATATT
GAATACCATCATACCATGTTAAAGTCACACCTAAAGGTGAATCCTCAGGA
AGTGATTGTTGGATGGTTTTCTACAGGGTTGGGAGTCACTGGTGGCAGTG
CCTTGATCCATGAATTCTATTGTCGCGAAGTTCCTAATCCTGTCCACCTG
ACTGTAGATACAGGATTCAAAAATGGAGAGGGTACTGTAAAAGCTTATGT
TTCTGTCAATTTGTCTCTTGGAGATCGAAAGCTTGCTGCACAATTTCAAG
AAAATCCCCTCCTTTGATCTTTCCAAATGAATTGAACCTGAGCGAGTTGG
ATTCCGATATTCTGAAATCAACTTCGGTTGACAAACTCCCTAAGGGATTG
GAAAGGAATGGAAAGTCCTGAAGGAAACGGCTACTTAACCTCTAATAAAG
GAAATTCCTACCAAATATGGTGATGGAACCTGGGGGAAAGGGGCTGGCGG
TAACCTGAACAAATACTGGGAGGGCGTATTTCTTCTCTAAAAACCTGTAA
CACCCCCCTTCCCCAAACTTGCACCCCCCCCCACCTTTTGTACAAAAATT
TGTTAAATAAAAAACCGCCCAGAGGGAGCCAAATTATGTTCCTTTTCGCT
TTTTTTTTTGCGTTGAACTATACTCTCCACCGAGCCACCCCCCTACGCCT
CAACTTTTTGTTTACACTGAATATAATATTTATGA
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