EY749258

Overview
NameEY749258
Unique NameEY749258
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1012
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY749258_ssr287 microsatellite EY749258_ssr287:287..301. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY749258 vs. ExPASy Swiss-Prot
Match: SCL8_ARATH (Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.110e-12
Identity = 46/119 (38.66%), Postives = 65/119 (54.62%), Query Frame = 1 
Query:  172 VSVITNTNSEWSETIQNLIT----------FSPKQTVSSIRPLXXXXXXXXXXXXXXXXXXXXXXXXKQTVIEAATAVLEGKYDVASEILTRLNQATNSKGNSEQRLMEHMWSALNSRV 498
            VSVITN+NS+W   IQNL+T          FSP  + SS  P                         +QTV+E ATA+ EGK ++A+EIL R++Q  N + NSE++L++ M +AL SR+
Sbjct:  216 VSVITNSNSDW---IQNLVTPNPNPNPVLSFSPSSSSSSSSP--------------STASTTTSVCSRQTVMEIATAIAEGKTEIATEILARVSQTPNLERNSEEKLVDFMVAALRSRI 317

HSP 2 Score: 23.483 bits (49), Expect = 2.110e-12
Identity = 9/22 (40.91%), Postives = 13/22 (59.09%), Query Frame = 2 
Query:  521 PVVEMFGKEHPQYNSFGFRISP 586
            PV E++GKEH       + +SP
Sbjct:  320 PVTELYGKEHLISTQLLYELSP 341
The following BLAST results are available for this feature:
BLAST of EY749258 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SCL8_ARATH2.110e-1238.66Scarecrow-like protein 8 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C5-003-071-G11-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY749258 ID=EY749258; Name=EY749258; organism=Citrus sinensis; type=EST; length=1012bp
CCCCTCGCGTCCGCTCGTTTCCACACGATACCGTACGTGGATCACAACAA
TACGGTACCGTCTTATAATAACAGGGTTCAGGTTCAAGGACAGGAATCAG
AGAAGAAGATGCTGAATCGTCTGCAGGAACTGGAGAAACAGTTGTTAGAC
GATGAGGAGGAAGGCGATGACGTGTCAGTTATAACGAATACAAACAGCGA
GTGGTCAGAAACCATACAAAATCTCATAACTTTCAGTCCGAAACAGACGG
TCTCGTCGATACGTCCGCTCGCCCCATCACCTACTACGTCGTCGTCGTCG
TGCTCATCGTCATCGGTGGCTTCGCCGGCTACGAGCTGTTCGAAACAGAC
GGTTATCGAAGCAGCAACGGCGGTTTTGGAGGGAAAATACGACGTCGCCT
CCGAAATCTTGACGCGGCTGAACCAGGCGACGAATTCTAAAGGGAATTCG
GAACAGAGGTTGATGGAGCACATGTGGTCAGCGTTGAACTCCCGCGTGAA
CCCACACGAAAACCCGCCGACCTGTCGTTGAGATGTTCGGAAAAGAACAC
CCCCAGTACAACTCCTTTGGTTTTAGAATTTCTCCCACGGGGTATGATAC
TGGGGCTTCAAGGGAGGGTAAATCCTCCCAATTTTCGCACGCTAACAATG
GGAAACCAACATACCCGGATCCACCGCAATCGGCGCACTAAAAATAACTT
CAATCGCTATACGATCCTCCACATGCCGGGCCCACGGGAGGAACTAGACC
ACTGCAAGTCCCCCTTCCCCCGCCCCCTCATACCGCGCCCACGCACTAAG
CTTGAAAAAAACCCTGCGTATCGACTTAAAAGATACTCTATTATCACCTC
TCGCTTGTCCTGGTTAAAATCTGGGTCCCTGCCACAACAGAAACACACAC
TCTTCGAACAGGGGCCCCCCTTCCACCCAACACAAATCTGTGAACGAAAA
CCAACACGGAACACGATACATTCCCGGACACAATGAGAAATGAAAGCCAC
GTCAAAGACGAC
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