EY695518

Overview
NameEY695518
Unique NameEY695518
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY695518_ssr290 microsatellite EY695518_ssr290:290..301. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2190 contig Csv1_Contig2190:8..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY695518 vs. ExPASy Swiss-Prot
Match: FDFT_ARATH (Squalene synthetase OS=Arabidopsis thaliana GN=SQS1 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.617e-66
Identity = 120/168 (71.43%), Postives = 137/168 (81.55%), Query Frame = 3
Query:  333 MGSLAAVLRHPDDLYPLLKLKMASRQAEKQIPPEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGIXMQLXI*PKEWVLGWQNHL-QRGRSIDDYDEY 833
            MGSL  +LR+PDD+YPLLK+K A  +AEKQIPPEPHW FCYSMLHKVSRSF+LVIQQL T+LRNAVC+FYLVLRALDTVEDDTSIPTD KVPILIAFHRH+YD +WH+SCGTKEYK+LMDQFHHVS AFLEL KG    +    +    G    + Q   ++DDYDEY
Sbjct:    1 MGSLGTMLRYPDDIYPLLKMKRAIEKAEKQIPPEPHWGFCYSMLHKVSRSFSLVIQQLNTELRNAVCVFYLVLRALDTVEDDTSIPTDEKVPILIAFHRHIYDTDWHYSCGTKEYKILMDQFHHVSAAFLELEKGYQEAIEEITRRMGAGMAKFICQEVETVDDYDEY 168          
BLAST of EY695518 vs. ExPASy Swiss-Prot
Match: FDFT_NICBE (Squalene synthetase OS=Nicotiana benthamiana PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 3.049e-65
Identity = 122/168 (72.62%), Postives = 138/168 (82.14%), Query Frame = 3
Query:  333 MGSLAAVLRHPDDLYPLLKLKMASRQAEKQIPPEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGKGIXMQLXI*PKEWVLGWQNHL-QRGRSIDDYDEY 833
            MGSL A+L++P+DLYPL+KLK+A+R AEKQIPP P+W FCYSMLHKVSRSFALVIQQL  +LR+AVCIFYLVLRALDTVEDDTSIPTDVKVPILI+FH+HVYDREWHFSCGTKEYKVLMDQFHHVSTAFLEL K     +         G    + +   + DDYDEY
Sbjct:    1 MGSLRAILKNPEDLYPLVKLKLAARHAEKQIPPSPNWGFCYSMLHKVSRSFALVIQQLPVELRDAVCIFYLVLRALDTVEDDTSIPTDVKVPILISFHQHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELRKHYQQAIEDITMRMGAGMAKFICKEVETTDDYDEY 168          
BLAST of EY695518 vs. ExPASy Swiss-Prot
Match: FDFT_RAT (Squalene synthetase OS=Rattus norvegicus GN=Fdft1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.731e-23
Identity = 54/133 (40.60%), Postives = 82/133 (61.65%), Query Frame = 3
Query:  354 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF------CYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGK 734
            L HP++ Y LL+ +M  R+    IP     +       CY  L + SRSFA VIQ L  D+R+AVC+FYL+LRA+DTVEDD +I  + K+P+L  FH  +Y+ EW F+   ++++V+++ F  +S  F  L +
Sbjct:    7 LGHPEEFYNLLRFRMGGRR--NFIPKMDRNSLSNSLKTCYKYLDQTSRSFAAVIQALDGDIRHAVCVFYLILRAMDTVEDDMAISVEKKIPLLRNFHTFLYEPEWRFTESKEKHRVVLEDFPTISLEFRNLAE 137          

HSP 2 Score: 25.0238 bits (53), Expect = 1.731e-23
Identity = 12/29 (41.38%), Postives = 15/29 (51.72%), Query Frame = 2
Query:  716 FSGAWKRYXDAIXDITKRMGAGMAKSFAK 802
            F    ++Y   I DI  RMG GMA+   K
Sbjct:  132 FRNLAEKYQTVIADICHRMGCGMAEFLNK 160          
BLAST of EY695518 vs. ExPASy Swiss-Prot
Match: FDFT_MOUSE (Squalene synthetase OS=Mus musculus GN=Fdft1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.931e-23
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 3
Query:  354 LRHPDDLYPLLKLKMASRQ----AEKQIPPEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGK 734
            L HP++ Y LL+ +M  R+       Q         CY  L++ SRSFA VIQ L  D+R+A+C+FYLVLRALDTVEDD SI  + K+P+L  FH  +YD EW F+   ++ + +++ F  +S  F  L +
Sbjct:    7 LGHPEEFYNLLRFRMGGRRNFIPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGDIRHAICVFYLVLRALDTVEDDMSISVEKKIPLLCNFHTFLYDPEWRFTESKEKDRQVLEDFPTISLEFRNLAE 137          

HSP 2 Score: 23.0978 bits (48), Expect = 2.931e-23
Identity = 10/25 (40.00%), Postives = 14/25 (56.00%), Query Frame = 2
Query:  716 FSGAWKRYXDAIXDITKRMGAGMAK 790
            F    ++Y   I DI  +MG GMA+
Sbjct:  132 FRNLAEKYQTVIDDICHQMGCGMAE 156          
BLAST of EY695518 vs. ExPASy Swiss-Prot
Match: FDFT_BOVIN (Squalene synthetase OS=Bos taurus GN=FDFT1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 8.402e-23
Identity = 55/133 (41.35%), Postives = 83/133 (62.41%), Query Frame = 3
Query:  354 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF------CYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGK 734
            L HP++ Y LL+ +M  R+  K IP     +       CY  L++ SRSFA VIQ L  ++R+AVCIFYLVLRALDT+EDD +I  + KVP+L  FH ++Y+ +W F+   ++ + +++ F  +S  F  L +
Sbjct:    7 LGHPEEFYNLLRFQMGGRR--KVIPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRHAVCIFYLVLRALDTLEDDMTISIERKVPLLHNFHSYLYEPDWRFTESKEKDRQVLEDFPTISLEFRNLAE 137          

HSP 2 Score: 25.7942 bits (55), Expect = 8.402e-23
Identity = 17/47 (36.17%), Postives = 25/47 (53.19%), Query Frame = 2
Query:  716 FSGAWKRYXDAIXDITKRMGAGMAKSFAKR*I-DR*L**IXYYVAGL 853
            F    ++Y   I D+ ++MG GMA+   KR   +R      +YVAGL
Sbjct:  132 FRNLAEKYQTVIVDVCQKMGFGMAEFLDKRVTSEREWDKYCHYVAGL 178          
BLAST of EY695518 vs. ExPASy Swiss-Prot
Match: FDFT_PONAB (Squalene synthetase OS=Pongo abelii GN=FDFT1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.976e-21
Identity = 52/133 (39.10%), Postives = 80/133 (60.15%), Query Frame = 3
Query:  354 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF------CYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGK 734
            L HP++ Y L++ ++  ++  K +P     +       CY  L++ SRSFA VIQ L  ++RNAVCIFYLVLRALDT+EDD +I  + KVP+L  FH  +Y  +W F    ++ + +++ F  +S  F  L +
Sbjct:    7 LGHPEEFYNLVRFRIGGKR--KVMPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAE 137          

HSP 2 Score: 25.7942 bits (55), Expect = 1.976e-21
Identity = 12/29 (41.38%), Postives = 16/29 (55.17%), Query Frame = 2
Query:  716 FSGAWKRYXDAIXDITKRMGAGMAKSFAK 802
            F    ++Y   I DI +RMG GMA+   K
Sbjct:  132 FRNLAEKYQTVIADICRRMGIGMAEFLDK 160          
BLAST of EY695518 vs. ExPASy Swiss-Prot
Match: FDFT_HUMAN (Squalene synthetase OS=Homo sapiens GN=FDFT1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.976e-21
Identity = 52/133 (39.10%), Postives = 80/133 (60.15%), Query Frame = 3
Query:  354 LRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF------CYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMDQFHHVSTAFLELGK 734
            L HP++ Y L++ ++  ++  K +P     +       CY  L++ SRSFA VIQ L  ++RNAVCIFYLVLRALDT+EDD +I  + KVP+L  FH  +Y  +W F    ++ + +++ F  +S  F  L +
Sbjct:    7 LGHPEEFYNLVRFRIGGKR--KVMPKMDQDSLSSSLKTCYKYLNQTSRSFAAVIQALDGEMRNAVCIFYLVLRALDTLEDDMTISVEKKVPLLHNFHSFLYQPDWRFMESKEKDRQVLEDFPTISLEFRNLAE 137          

HSP 2 Score: 25.7942 bits (55), Expect = 1.976e-21
Identity = 12/29 (41.38%), Postives = 16/29 (55.17%), Query Frame = 2
Query:  716 FSGAWKRYXDAIXDITKRMGAGMAKSFAK 802
            F    ++Y   I DI +RMG GMA+   K
Sbjct:  132 FRNLAEKYQTVIADICRRMGIGMAEFLDK 160          
BLAST of EY695518 vs. ExPASy Swiss-Prot
Match: FDFT_PICJA (Squalene synthetase OS=Pichia jadinii GN=ERG9 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.483e-19
Identity = 57/178 (32.02%), Postives = 93/178 (52.25%), Query Frame = 3
Query:  333 MGSLAAVLRHPDDLYPLLKLKMASRQAEKQIPPEPHWAF--CYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFS---------CGTKEYKVLMDQFHHVSTAFLELGKGIXMQLXI*PKEWVLGWQNHLQRGRSIDDYDEY 833
            MG L  +  HPD+L  +++ K+  +    + P         CY +L+  SRSFA VI++L  +LRN + +FYLVLRALDTVE D SI   VK+P+L  FH  +  ++W F          C   E+  ++ Q+H +   + ++ K I  ++     +++     +     +I+DYD Y
Sbjct:    1 MGKLLQLALHPDELASIVQFKLFRKNENARNPATESAELIRCYELLNLTSRSFAAVIEELHPELRNVIMVFYLVLRALDTVEVDMSIENSVKLPVLRQFHEKLDTKDWTFDGNSPNEKDRCVLVEFDRILGQYHELKPQYQKVIKEITEKMGNGMADYIENENFNSNGLLTIEDYDLY 178          
BLAST of EY695518 vs. ExPASy Swiss-Prot
Match: FDFT_YEAST (Squalene synthetase OS=Saccharomyces cerevisiae GN=ERG9 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.634e-19
Identity = 60/178 (33.71%), Postives = 92/178 (51.69%), Query Frame = 3
Query:  333 MGSLAAVLRHPDDLYPLLKLKMASRQAEK--QIPPEPHWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYK---VLMD------QFHHVSTAFLELGKGIXMQLXI*PKEWVLGWQNHLQRGRSIDDYDEY 833
            MG L  +  HP ++   LKLK               P+   C+ +L+  SRSFA VI++L  +LRN V +FYL+LRALDT+EDD SI  D+K+ +L  FH  +   +W F     + K   VL D      +FH +   + E+ K I  ++     +++L    +L   +++ DYD Y
Sbjct:    1 MGKLLQLALHPVEMKAALKLKFCRTPLFSIYDQSTSPYLLHCFELLNLTSRSFAAVIRELHPELRNCVTLFYLILRALDTIEDDMSIEHDLKIDLLRHFHEKLLLTKWSFDGNAPDVKDRAVLTDFESILIEFHKLKPEYQEVIKEITEKMGNGMADYILDENYNLNGLQTVHDYDVY 178          
BLAST of EY695518 vs. ExPASy Swiss-Prot
Match: FDFT_DICDI (Squalene synthetase OS=Dictyostelium discoideum GN=fdfT PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.255e-18
Identity = 64/185 (34.59%), Postives = 96/185 (51.89%), Query Frame = 3
Query:  354 LRHPDDLYPLLKLKMASRQAEKQIPPEP--HWAFCYSMLHKVSRSFALVIQQLGTDLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWH-FSCG-TKEYKVLMDQFHHVSTAFLELGKGIXMQLXI*PKEWVLGWQNHLQRG-RSIDDYDEYXTM*QDLXDXSV-QAFYASG 890
            L HPD+   LLK+        K    E   +  +CY +L+K SRSFA VI +L   L++A+CIFYLVLR LDT+EDDT++  + K+P+L +F   +Y   +  F  G   + K L++ F  V   FL LG G    +    +    G    LQ+   ++ ++D Y      L    + + F+ASG
Sbjct:    7 LAHPDEFLSLLKIGYTESFKPKSQLKENLGNKEWCYELLNKTSRSFAFVINELEPSLKDAICIFYLVLRGLDTIEDDTTVELNTKLPVLTSFSEGLYQPGYKVFGYGMNNDEKNLVENFDKVVDVFLGLGDGYCTIIHDITRRMANGMSEFLQKSVVTLPEWDLYCHYVAGLVGIGLSKIFHASG 191          
The following BLAST results are available for this feature:
BLAST of EY695518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
FDFT_ARATH1.617e-6671.43Squalene synthetase OS=Arabidopsis thaliana GN=SQS... [more]
FDFT_NICBE3.049e-6572.62Squalene synthetase OS=Nicotiana benthamiana PE=2 ... [more]
FDFT_RAT1.731e-2340.60Squalene synthetase OS=Rattus norvegicus GN=Fdft1 ... [more]
FDFT_MOUSE2.931e-2341.98Squalene synthetase OS=Mus musculus GN=Fdft1 PE=2 ... [more]
FDFT_BOVIN8.402e-2341.35Squalene synthetase OS=Bos taurus GN=FDFT1 PE=2 SV... [more]
FDFT_PONAB1.976e-2139.10Squalene synthetase OS=Pongo abelii GN=FDFT1 PE=2 ... [more]
FDFT_HUMAN1.976e-2139.10Squalene synthetase OS=Homo sapiens GN=FDFT1 PE=1 ... [more]
FDFT_PICJA1.483e-1932.02Squalene synthetase OS=Pichia jadinii GN=ERG9 PE=3... [more]
FDFT_YEAST5.634e-1933.71Squalene synthetase OS=Saccharomyces cerevisiae GN... [more]
FDFT_DICDI1.255e-1834.59Squalene synthetase OS=Dictyostelium discoideum GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-037-C10-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY695518 ID=EY695518; Name=EY695518; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGCATATTCTTTGCTTCAGCACAGCCTCTCTCCTCAAGTCC
AATTCAGTCAGTATAATTAATTAAAATCACTTTCATTGTAAACTACAAAT
TATTCTCCATTTTGTGTTTTTATTTTCAACCAATAATCAAATTCTAAAAT
TAAAAAAATAAAAACCAAATCTTCGGAACCCACATTACAAGGTTATTTAT
TTGTTCTGTTTACAGGACGCCATTATAAGAGACCCAGAATCTAGCAAAAT
TTAACGCCTCCTACAAATACCCTTTCGAAGATTTTATTTTTGTTGTTGTT
GCTTTCTAGGTTTACAAAAAAAAAATAAAAAAATGGGGAGTTTGGCAGCG
GTGTTGAGGCACCCAGATGATCTTTACCCGTTATTGAAGCTGAAAATGGC
ATCGAGGCAAGCTGAAAAGCAGATCCCACCTGAGCCTCACTGGGCTTTTT
GTTACTCTATGCTTCATAAGGTCTCCAGAAGTTTCGCTCTCGTTATTCAA
CAGCTCGGTACTGACCTCAGAAACGCCGTTTGCATATTTTATTTGGTTCT
TCGAGCCCTCGACACTGTTGAGGATGACACCAGCATACCTACAGATGTCA
AAGTGCCTATTCTGATAGCTTTTCATCGTCATGTTTATGACCGTGAATGG
CATTTTTCTTGTGGTACAAAGGAATACAAAGTGCTCATGGATCAATTTCA
TCACGTTTCAACTGCTTTTCTGGAGCTTGGAAAAGGTATCANGATGCAAT
TGNAGATATAACCAAAAGAATGGGTGCTGGGATGGCAAAATCATTTGCAA
AGAGGTAGATCGATCGATGACTATGATGAATATGNTACTATGTAGCAGGA
CTTGNNTGATANGTCTGTCCAAGCTTTCTATGCCTCTGGACGAA
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