EY692482

Overview
NameEY692482
Unique NameEY692482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692482_ssr743 microsatellite EY692482_ssr743:743..754. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9828 contig Csv1_Contig9828:35..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY692482 vs. ExPASy Swiss-Prot
Match: TCP7_ARATH (Transcription factor TCP7 OS=Arabidopsis thaliana GN=TCP7 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.723e-47
Identity = 121/241 (50.21%), Postives = 138/241 (57.26%), Query Frame = 2
Query:  107 SNSDGATNGVSNGAIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVRGGGNXXXXXXXXXXXXXXXXXEHKPSL---GPAPFILGKRVRSDDDGTKGEDSISAVGPATVGPIVGPATPGGGFWALPARPDFGQVWSFXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXAMGEASAARVGN 820
            +N+DG     SNGA+I+   QQP    ++ VKKPP+KDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE               FST SVS+RG  N                 +HKP+    G +PFILGKRVR+D      EDS ++   ++VG      T   GFWA+PARPDFGQVWSF                               AMGEASAARVGN
Sbjct:   12 NNNDGLMIS-SNGALIE---QQP----SVVVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASVSIRGATN-------------STSLDHKPTSLLGGTSPFILGKRVRAD------EDSNNSHNHSSVGKDETFTTTPAGFWAVPARPDFGQVWSF--AGAPQEMFLQQQHHHQQPLFVHQQQQQQAAMGEASAARVGN 223          
BLAST of EY692482 vs. ExPASy Swiss-Prot
Match: TCP21_ARATH (Transcription factor TCP21 OS=Arabidopsis thaliana GN=TCP21 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.912e-43
Identity = 122/272 (44.85%), Postives = 136/272 (50.00%), Query Frame = 2
Query:  104 MSNSDGATNGVSNGAIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVRGGGNXXXXXXXXXXXXXXXXXEHKPSLGPAPFILGKRVRSDDDGTKGEDSISAVGPATVGPIVGPATPG----GGFWALPARPDFGQVWSF----XXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXAMGEASAARVGNISRSSH---LLHLIGRARXSVERRD 886
            M+++DGA   VSNG I++    + P N    VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE               FST S+S                               +PF LGKRV   ++G  G       G  TVG  +G +  G    GGFWA+PARPDFGQVWSF                 +                 AMGEASAARVGN     H   L  L G A  S  R D
Sbjct:    1 MADNDGA---VSNGIIVEQTSNKGPLNA---VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTASLST-----------------------------SSPFTLGKRVVRAEEGESGG---GGGGGLTVGHTMGTSLMGGGGSGGFWAVPARPDFGQVWSFATGAPPEMVFAQQQQPATLFVRHQQQQQASAAAAAAMGEASAARVGNYLPGHHLNLLASLSGGANGSGRRED 234          
BLAST of EY692482 vs. ExPASy Swiss-Prot
Match: TCP22_ARATH (Transcription factor TCP22 OS=Arabidopsis thaliana GN=TCP22 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.867e-24
Identity = 74/176 (42.05%), Postives = 91/176 (51.70%), Query Frame = 2
Query:   86 ILPGAHMSNSDGATNGVSNGAIIDPQRQQPPGNGALTVK---KPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVRGGGNXXXXXXXXXXXXXXXXXEHKPSLGPAPF-ILGKRVRSDDDGTKGEDSISAVGPA 601
            I  G H + S  AT+  S  +          G+    VK   K P+KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAE               FST++ S+R GG                    K S  P  F   G  +  D++GT G    S+V P+
Sbjct:   28 ISSGQHGNISTSATSSTSTSS----------GSALAVVKSAVKKPTKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFSTLNASLRSGGG-----------STLFSQASKSSSSPLSFHSTGMSLYEDNNGTNG----SSVDPS 178          
BLAST of EY692482 vs. ExPASy Swiss-Prot
Match: TCP8_ARATH (Transcription factor TCP8 OS=Arabidopsis thaliana GN=TCP8 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.871e-23
Identity = 63/128 (49.22%), Postives = 76/128 (59.38%), Query Frame = 2
Query:  107 SNSDGATNGVSNGA--IIDPQ-----RQQPPGNGAL---------TVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVRGGGN 442
            +N+D A      GA  ++D       R  PP +  L         T  K  +KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAE               FST+SVS+R  G+
Sbjct:    9 NNNDTAAVATGGGARQLVDASLSIVPRSTPPEDSTLATTSSTATATTTKRSTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIVAATGTGTIPANFSTLSVSLRSSGS 136          
BLAST of EY692482 vs. ExPASy Swiss-Prot
Match: TCP23_ARATH (Transcription factor TCP23 OS=Arabidopsis thaliana GN=TCP23 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.395e-23
Identity = 59/115 (51.30%), Postives = 69/115 (60.00%), Query Frame = 2
Query:   98 AHMSNSDGATNGVSNGAIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVRGGGN 442
            AH+  S G  +G  +     P         A T  K PSKDRH KVDGRGRRIRMP ICAARVFQLTREL HKSDG+TIEWLL+QAE                ST+++S+R  G+
Sbjct:   17 AHLVPSMGPISGSVSLTTTAPNSTTTTVTAAKTPAKRPSKDRHIKVDGRGRRIRMPAICAARVFQLTRELQHKSDGETIEWLLQQAEPAIIAATGTGTIPANISTLNISLRSSGS 131          
BLAST of EY692482 vs. ExPASy Swiss-Prot
Match: TCP14_ARATH (Transcription factor TCP14 OS=Arabidopsis thaliana GN=TCP14 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.071e-22
Identity = 51/92 (55.43%), Postives = 65/92 (70.65%), Query Frame = 2
Query:  182 NGALTVKKPP-----SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVRGGGN 442
            +  +  KKPP     +KDRH+KVDGRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAE               F+++++S+R  G+
Sbjct:  102 SAVVAAKKPPLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGS 193          
BLAST of EY692482 vs. ExPASy Swiss-Prot
Match: PCF3_ORYSJ (Transcription factor PCF3 OS=Oryza sativa subsp. japonica GN=PCF3 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.986e-21
Identity = 54/119 (45.38%), Postives = 72/119 (60.50%), Query Frame = 2
Query:   86 ILPGAHMSNSDGATNGVSNGAIIDPQRQQPPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVRGGGN 442
            I+P A      G     +   +   +++     GA    K P+KDRH+KV+GRGRRIRMP +CAARVFQLTRELGHK+DG+TIEWLL+QAE               FS+++VS+R   +
Sbjct:  112 IVPAAAAPGGGGGQVQAAAAPVASSEKKAVVAAGAGA--KRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSSLAVSLRSAAS 228          
BLAST of EY692482 vs. ExPASy Swiss-Prot
Match: TCP15_ARATH (Transcription factor TCP15 OS=Arabidopsis thaliana GN=TCP15 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.275e-20
Identity = 54/110 (49.09%), Postives = 69/110 (62.73%), Query Frame = 2
Query:  116 DGATNGVSNGAIIDPQRQQPPGNGALTVKKPP-----SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEXXXXXXXXXXXXXXXFSTVSVSVR 430
            D +T+  S    I     +P        KKPP     +KDRH+KV+GRGRRIRMP +CAARVFQLTRELGHKSDG+TIEWLL+QAE               F+++++S+R
Sbjct:   19 DSSTSSSSTSLAIISTTSEPNSEP----KKPPPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLR 124          
BLAST of EY692482 vs. ExPASy Swiss-Prot
Match: TCP20_ARATH (Transcription factor TCP20 OS=Arabidopsis thaliana GN=TCP20 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.248e-18
Identity = 41/53 (77.36%), Postives = 50/53 (94.34%), Query Frame = 2
Query:  200 KKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 358
            K+  +KDRH+KV+GRGRRIRMP +CAAR+FQLTRELGHKSDG+TI+WLL+QAE
Sbjct:   74 KRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAE 126          
BLAST of EY692482 vs. ExPASy Swiss-Prot
Match: TCP9_ARATH (Transcription factor TCP9 OS=Arabidopsis thaliana GN=TCP9 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.630e-18
Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = 2
Query:  173 PPGNGALTVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 358
            PP +    +K+  +KDRH+KV+GRGRRIRMP  CAAR+FQLTRELGHKSDG+TI WLL  AE
Sbjct:   62 PPSSTGPPLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAE 123          
The following BLAST results are available for this feature:
BLAST of EY692482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TCP7_ARATH3.723e-4750.21Transcription factor TCP7 OS=Arabidopsis thaliana ... [more]
TCP21_ARATH1.912e-4344.85Transcription factor TCP21 OS=Arabidopsis thaliana... [more]
TCP22_ARATH9.867e-2442.05Transcription factor TCP22 OS=Arabidopsis thaliana... [more]
TCP8_ARATH2.871e-2349.22Transcription factor TCP8 OS=Arabidopsis thaliana ... [more]
TCP23_ARATH6.395e-2351.30Transcription factor TCP23 OS=Arabidopsis thaliana... [more]
TCP14_ARATH7.071e-2255.43Transcription factor TCP14 OS=Arabidopsis thaliana... [more]
PCF3_ORYSJ5.986e-2145.38Transcription factor PCF3 OS=Oryza sativa subsp. j... [more]
TCP15_ARATH2.275e-2049.09Transcription factor TCP15 OS=Arabidopsis thaliana... [more]
TCP20_ARATH1.248e-1877.36Transcription factor TCP20 OS=Arabidopsis thaliana... [more]
TCP9_ARATH1.630e-1867.74Transcription factor TCP9 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-B05-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692482 ID=EY692482; Name=EY692482; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGATCATTCACGCTCTTTCTCTCTCTAACACTCTTTTAACT
ACTTCAACAAACCCTAAAGCTTTTATCTTCGCCAAATTCTACCTGGTGCT
CATATGTCTAATTCGGACGGTGCCACTAACGGCGTCTCCAACGGCGCTAT
TATTGACCCCCAGAGACAGCAGCCTCCTGGTAATGGCGCGTTAACCGTCA
AGAAGCCGCCCTCCAAGGACCGCCACAGCAAGGTCGACGGCCGCGGCAGG
AGAATCCGCATGCCGATCATTTGCGCAGCGCGTGTTTTCCAGTTGACTCG
CGAGCTCGGCCACAAATCCGACGGCCAGACCATCGAGTGGCTTCTCCGCC
AAGCCGAGCCCTCAATCATTGCTGCCACGGGGACGGGTACCACTCCGGCT
AGCTTCTCCACTGTCTCGGTGTCGGTTCGCGGCGGAGGGAACTCGACTTC
CTTGTCGTCGACGGTGTCTTCTTCGGCTATCTCCGCTGCGTTGGAACATA
AGCCCTCGCTGGGTCCCGCCCCGTTCATTCTTGGAAAACGCGTGAGGTCC
GACGATGATGGGACCAAAGGGGAAGATTCCATTTCTGCCGTGGGTCCTGC
CACGGTGGGGCCGATAGTGGGCCCTGCGACTCCAGGTGGCGGGTTCTGGG
CTTTGCCGGCCAGGCCGGATTTTGGGCAGGTCTGGAGTTTCGCTGCAGCT
GCCGCGCCGGAGATGGTGGTGCANGCGGCTTCTCAGCAACAGCATCATCA
TCATCAGCAGCCACACCAGTTGGTTATGCAGCAAGCTATGGGAGAGGCAT
CGGCGGCTAGAGTGGGGAATATCTCCCGGTCATCTCATTTGCTGCATCTT
ATCGGCCGGGCCCGGNAGTCGGTCGAAAGAAGAGACCGN
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