EY692478

Overview
NameEY692478
Unique NameEY692478
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2610 contig Csv1_Contig2610:620..1381. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY692478 vs. ExPASy Swiss-Prot
Match: CCD25_PONAB (Coiled-coil domain-containing protein 25 OS=Pongo abelii GN=CCDC25 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.989e-24
Identity = 61/136 (44.85%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 PRVRLVDC--------VAGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXKLQLXXXXXXXXXXXXXXXXQAEVRSYKGLMVAEKMTSNK 384
            P+  L+DC        + G K+NN++VVYTPW+NLKKTA MDVGQ+GFH  K V+ V VEK++NEI+NRL KTKVER PDL               K Q+                  E+RSY  LM  E M+SN+
Sbjct:   64 PKEVLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVTVEKKVNEILNRLEKTKVERFPDLAAEKECRDREERNEKKAQIQEMKRREKEEMKKKREMDELRSYSSLMKVENMSSNQ 199          
BLAST of EY692478 vs. ExPASy Swiss-Prot
Match: CCD25_HUMAN (Coiled-coil domain-containing protein 25 OS=Homo sapiens GN=CCDC25 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.989e-24
Identity = 61/136 (44.85%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 PRVRLVDC--------VAGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXKLQLXXXXXXXXXXXXXXXXQAEVRSYKGLMVAEKMTSNK 384
            P+  L+DC        + G K+NN++VVYTPW+NLKKTA MDVGQ+GFH  K V+ V VEK++NEI+NRL KTKVER PDL               K Q+                  E+RSY  LM  E M+SN+
Sbjct:   64 PKEVLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVTVEKKVNEILNRLEKTKVERFPDLAAEKECRDREERNEKKAQIQEMKKREKEEMKKKREMDELRSYSSLMKVENMSSNQ 199          
BLAST of EY692478 vs. ExPASy Swiss-Prot
Match: CCD25_BOVIN (Coiled-coil domain-containing protein 25 OS=Bos taurus GN=CCDC25 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.904e-24
Identity = 60/136 (44.12%), Postives = 78/136 (57.35%), Query Frame = 1
Query:    1 PRVRLVDC--------VAGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXKLQLXXXXXXXXXXXXXXXXQAEVRSYKGLMVAEKMTSNK 384
            P+  L+DC        + G K+NN++VVYTPW+NLKKTA MDVGQ+GFH  K V+ V VEK++NEI+NRL KTK+ER PDL+              K Q+                  E+RSY  LM  E M+SN+
Sbjct:   64 PKEVLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVTVEKKVNEILNRLEKTKMERFPDLEAEKECRDHEERNEKKAQIQEMKRREKEEMKKKREMDELRSYSSLMKVENMSSNQ 199          
BLAST of EY692478 vs. ExPASy Swiss-Prot
Match: CCD25_MOUSE (Coiled-coil domain-containing protein 25 OS=Mus musculus GN=Ccdc25 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.484e-23
Identity = 59/136 (43.38%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 PRVRLVDC--------VAGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXKLQLXXXXXXXXXXXXXXXXQAEVRSYKGLMVAEKMTSNK 384
            P+  L+DC        + G K+NN++VVYTPW+NLKKTA MDVGQ+GFH  K V+ V VEK++NEI+NRL KTK+E+ PDL               K Q+                  E+RSY  LM  E M+SN+
Sbjct:   64 PKEVLMDCAHLVKANSIQGCKMNNVNVVYTPWSNLKKTADMDVGQIGFHRQKDVKIVTVEKKVNEILNRLEKTKLEKFPDLAAEKEGRDREERNEKKAQIQEMKRKEKEEMKKKREMDELRSYSSLMKVENMSSNQ 199          
BLAST of EY692478 vs. ExPASy Swiss-Prot
Match: CCD25_DANRE (Coiled-coil domain-containing protein 25 OS=Danio rerio GN=ccdc25 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.531e-23
Identity = 58/136 (42.65%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 PRVRLVDCVA--------GNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXKLQLXXXXXXXXXXXXXXXXQAEVRSYKGLMVAEKMTSNK 384
            P+  L+DCV         G K+NNI++VYTPW+NLKKTA MD+GQ+GFH  K V+ V VEK+INEIVNRL KTK ER PDL               K Q+                  ++++Y  LM ++ MT+N+
Sbjct:   63 PKEVLIDCVQLVKNNSIQGCKMNNINIVYTPWSNLKKTADMDIGQIGFHRQKEVKIVAVEKKINEIVNRLEKTKEERYPDLAAEKESRDREERNEKKAQIQEQKKKEKEEVKKKKEMEDLKNYTSLMKSDNMTTNE 198          
BLAST of EY692478 vs. ExPASy Swiss-Prot
Match: CCD25_XENTR (Coiled-coil domain-containing protein 25 OS=Xenopus tropicalis GN=ccdc25 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.233e-22
Identity = 60/136 (44.12%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    1 PRVRLVDC--------VAGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXKLQLXXXXXXXXXXXXXXXXQAEVRSYKGLMVAEKMTSNK 384
            P+  L+DC        + G K+NNI+VVYTPWANLKKTA MD+GQ+GFH  K V+T+ VEK +++IVNRL KTK ER PDL               K Q+                  E+RSY  LM +E M+SN+
Sbjct:   63 PKEVLLDCAQLVKANSIQGCKMNNINVVYTPWANLKKTADMDIGQIGFHRQKDVKTMTVEK-VSKIVNRLEKTKDERFPDLAAEKEARDREERNEKKAQIQEIKRKEKEEMKKKKEMDELRSYSSLMKSENMSSNQ 197          
BLAST of EY692478 vs. ExPASy Swiss-Prot
Match: CCD25_DICDI (Coiled-coil domain-containing protein 25 homolog OS=Dictyostelium discoideum GN=ccdc25 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.010e-12
Identity = 40/137 (29.20%), Postives = 68/137 (49.64%), Query Frame = 1
Query:   25 VAGNKVNNIDVVYTPWANLKKTASMDVGQVGFHNPKMVRTVKVEKRINEIVNRLNKTKVERKPDLKXXXXXXXXXXXXXXKLQLXXXXXXXXXXXXXXXXQAEVRSYKGLMVAEKMTSNKQIASESKSLQELEEDFM 435
            + G K  ++D+VYTPWANLKKTA M+ GQV +HN + V+ V+  ++ ++I+NR+ KT+ +R+ DL               + +                   +++ Y  +M  + M  NK   ++       E+DFM
Sbjct:   77 IQGCKEASVDIVYTPWANLKKTAGMEAGQVLYHNEREVKYVRNVRKDSKIINRIEKTREKREVDLMHERDSRDKSERHEKRKEQEEKRRAEKKAYEEKQKMEDIKKYTSIMKTDNMKFNKYNPTD-------EDDFM 206          
The following BLAST results are available for this feature:
BLAST of EY692478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CCD25_PONAB2.989e-2444.85Coiled-coil domain-containing protein 25 OS=Pongo ... [more]
CCD25_HUMAN2.989e-2444.85Coiled-coil domain-containing protein 25 OS=Homo s... [more]
CCD25_BOVIN3.904e-2444.12Coiled-coil domain-containing protein 25 OS=Bos ta... [more]
CCD25_MOUSE1.484e-2343.38Coiled-coil domain-containing protein 25 OS=Mus mu... [more]
CCD25_DANRE2.531e-2342.65Coiled-coil domain-containing protein 25 OS=Danio ... [more]
CCD25_XENTR6.233e-2244.12Coiled-coil domain-containing protein 25 OS=Xenopu... [more]
CCD25_DICDI2.010e-1229.20Coiled-coil domain-containing protein 25 homolog O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-B01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692478 ID=EY692478; Name=EY692478; organism=Citrus sinensis; type=EST; length=820bp
CCACGCGTCCGGTTGGTTGATTGCGTGGCAGGCAATAAGGTGAATAACAT
TGATGTTGTTTATACACCTTGGGCCAATTTGAAGAAAACTGCTTCCATGG
ATGTTGGCCAAGTTGGTTTCCACAATCCGAAGATGGTTCGGACAGTGAAA
GTGGAGAAAAGAATAAATGAGATAGTTAATAGATTGAACAAAACAAAAGT
GGAGAGGAAACCTGATTTGAAAGCGGAAAGAGAGGCTGCAAATGCTGCAG
AAAGAGCTGAGAGAAAGCTTCAGCTGAGAGATAAAAAACGGCGGGAGGAA
ATGGAAAGGCTTGAGAAGGAGAGACAAGCTGAGGTAAGGAGCTACAAGGG
ACTGATGGTTGCCGAAAAGATGACATCTAACAAACAAATTGCATCAGAGA
GCAAGTCCTTACAGGAACTGGAAGAGGACTTTATGTAAGCACATAACTAT
TACCCGTTGAGTTAAGAGCATCTAGATTTGCTGCCTTAGAAAAATGTGAG
AGTTTGGCATTCAGTTTTTGTAAGTTATCATCCCTCTGTAGTAATAAATC
ACCTTAATCCTAATCTGTCACCCGAGGATTTAGTAACAAATATAAATATG
CAACCTTGGGGAGGGAGATGGGGGAGTTTAAAGGGAAGATGAACTTCATT
ATTTCGCCCATCCATATGCTGTACTTTGATAATGACGAAACATGATCTGA
ATCTGTATGTGTGATTGATGGATGATGAACCTGTGCTTTTGTCGTCAGAT
TTTAGTAGCAAATTGCCGTCAGATTTTAGTAGCNNNNNANNNNNNNNAAA
AAAAAAAANANAAAAAAAAA
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