EY692472

Overview
NameEY692472
Unique NameEY692472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY692472_ssr216 microsatellite EY692472_ssr216:216..230. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9224 contig Csv1_Contig9224:1..937. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY692472 vs. ExPASy Swiss-Prot
Match: SKI24_ARATH (F-box protein SKIP24 OS=Arabidopsis thaliana GN=SKIP24 PE=1 SV=2)

HSP 1 Score: 268.855 bits (686), Expect = 3.038e-71
Identity = 138/254 (54.33%), Postives = 184/254 (72.44%), Query Frame = 3 
Query:   27 MLANALPDELVRKILESGVQNRSFTCKDLCCLSIACRRLHRLSAEDSLWSQLLFSDFPNNXXXXXXXXXXXXIKAVYRTRFEKDRERKLAAHRRAVLRKESQVAENLRKVREIESKLRDEADKLKFTSAELSNLRRARQASVALNVWQPEVVRGRQKQIVEQSVVPAESRLHALEMELXLCQQQIAGFEKAYREQRQRLDKAKEELNVMKYHPLREYNLTSSEDXETHKKSKKIETCNNFTGDGFSEVSQNSKK 788
            M AN +PDEL RKILE GV++ +F+ KDLCC+SI+ RRL RLS +DSLW  LL  DFPN+             K +Y TRFE+++ERKLAAHRRA+LRKES+++E  R++RE+E++L DEA++L+ +S + S+L + RQASVALNVWQPEVVRGRQKQ+VEQ+ VP E RL ALEME+ LC+QQI G  +A RE + R D A +EL  MKYHPLR+Y    + D  ++ K+KK++T  N++GD  S   +   K
Sbjct:    1 MSANEIPDELWRKILEIGVKSSTFSYKDLCCISISSRRLFRLSCDDSLWDLLLVHDFPNHIVSASSSSESPT-KFIYMTRFEREKERKLAAHRRALLRKESEISEWGRRIRELEARLSDEAERLQSSSLQFSDLLKVRQASVALNVWQPEVVRGRQKQMVEQNAVPVEGRLRALEMEMKLCKQQIMGLNRALREVKHRYDIAIKELESMKYHPLRDYKSIRNGDQGSNGKTKKLKTSINYSGDQVSNGKRRKLK 253
The following BLAST results are available for this feature:
BLAST of EY692472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI24_ARATH3.038e-7154.33F-box protein SKIP24 OS=Arabidopsis thaliana GN=SK... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-A07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692472 ID=EY692472; Name=EY692472; organism=Citrus sinensis; type=EST; length=937bp
CCACGCGTCCGAAGTTACCAGCGATAATGTTAGCTAATGCTCTACCCGAC
GAGCTCGTGAGGAAAATTCTGGAATCCGGAGTTCAAAACCGCAGTTTCAC
CTGTAAGGATTTGTGCTGCCTCTCGATCGCCTGTAGGCGCCTCCACCGAT
TGTCCGCAGAAGACTCCCTCTGGTCCCAGTTACTCTTCTCCGATTTCCCT
AACAATTCCTCCCATTCATCATCATCATCATCGGCGTCGTCAATCAAAGC
CGTCTATCGAACTAGATTTGAGAAGGACAGGGAGAGGAAACTAGCGGCGC
ATAGAAGGGCTGTGCTGAGGAAAGAGAGTCAAGTGGCCGAGAATTTGAGG
AAGGTTCGAGAAATTGAAAGTAAGTTGCGAGACGAGGCCGATAAATTGAA
ATTTACATCTGCCGAGCTATCGAATTTACGCAGAGCCAGGCAAGCTTCTG
TGGCGTTGAATGTGTGGCAGCCAGAAGTTGTTAGGGGTAGACAGAAACAA
ATAGTTGAGCAAAGTGTTGTTCCTGCTGAATCTAGATTGCATGCACTCGA
GATGGAACTTANGCTTTGCCAGCAACAAATTGCAGGTTTTGAAAAGGCCT
ATAGGGAGCAGAGGCAAAGGCTTGACAAGGCAAAGGAAGAGTTGAATGTC
ATGAAATATCATCCTTTACGAGAGTATAACTTGACTAGTAGTGAGGACNA
TGAAACTCACAAAAAGAGCAAGAAAATCGAAACGTGCAATAATTTTACTG
GAGATGGATTTTCGGAGGTCAGTCAGAACTCGAAGAAATAAANGAATGCA
GTTNNCACACTGACTGATGCATCATCGCTTATTGGACNTTGAAAAAAATG
GAACAATCACAGGATTCTTACAAATTGGAGGGGAAAAAGGGTGGACAAGA
TATGATGAACATTTAAGTCTGTAGGTTCACTTACCTC
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