EY692468

Overview
NameEY692468
Unique NameEY692468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length918
Libraries
Library NameType
Sweet orange fruit, development stadium (1 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RM02_ARATH (60S ribosomal protein L2, mitochondrial OS=Arabidopsis thaliana GN=RPL2 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.323e-46
Identity = 99/128 (77.34%), Postives = 106/128 (82.81%), Query Frame = 3
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGVQMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFLSQNVDQRKVASFSPGLMA 635
            RALRQFTL  GKSAGRNSSGRIT+FHRGGGSKRL RRIDLKR+TSS+GIVE +EYDPNRSS IAPVRWI+G    QKK NTIE+F PP  RK  EPTT  ISG FSFSFL   VD+RKVA FSPGLMA
Sbjct:    7 RALRQFTLSTGKSAGRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSMGIVESIEYDPNRSSQIAPVRWIKG--GCQKKMNTIEKFAPP--RKILEPTTNTISGLFSFSFLPGKVDKRKVACFSPGLMA 130          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 9.652e-38
Identity = 90/130 (69.23%), Postives = 98/130 (75.38%), Query Frame = 3
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGV-QMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFLSQNVDQRKVASFSPGLMAG 638
            RALR FTL  GKSAGRNSSGRIT+FHRGGGSKRLQR+IDLKR+TSSIGIVER+EYDPNRSS IA VRWIEGV   +Q+K  TIEEF  P  RK  E TTA I   FSFS LS  + Q + AS S G   G
Sbjct:    8 RALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERIEYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALP--RKILESTTATIFCLFSFSSLSSPLAQGETASLSFGSSLG 135          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 9.652e-38
Identity = 90/130 (69.23%), Postives = 98/130 (75.38%), Query Frame = 3
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGV-QMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFLSQNVDQRKVASFSPGLMAG 638
            RALR FTL  GKSAGRNSSGRIT+FHRGGGSKRLQR+IDLKR+TSSIGIVER+EYDPNRSS IA VRWIEGV   +Q+K  TIEEF  P  RK  E TTA I   FSFS LS  + Q + AS S G   G
Sbjct:    8 RALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERIEYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALP--RKILESTTATIFCLFSFSSLSSPLAQGETASLSFGSSLG 135          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.652e-38
Identity = 90/130 (69.23%), Postives = 98/130 (75.38%), Query Frame = 3
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGV-QMQQKKCNTIEEFDPPPLRKFFEPTTAAISGKFSFSFLSQNVDQRKVASFSPGLMAG 638
            RALR FTL  GKSAGRNSSGRIT+FHRGGGSKRLQR+IDLKR+TSSIGIVER+EYDPNRSS IA VRWIEGV   +Q+K  TIEEF  P  RK  E TTA I   FSFS LS  + Q + AS S G   G
Sbjct:    8 RALRHFTLSTGKSAGRNSSGRITVFHRGGGSKRLQRKIDLKRSTSSIGIVERIEYDPNRSSRIALVRWIEGVLPGRQRKFKTIEEFALP--RKILESTTATIFCLFSFSSLSSPLAQGETASLSFGSSLG 135          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 4.969e-26
Identity = 59/79 (74.68%), Postives = 67/79 (84.81%), Query Frame = 3
Query:  252 RALRQFTLG-KGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSIGIVERVEYDPNRSSWIAPVRWIEGVQMQQKK 485
            +AL+Q T   K  SAGRNSSGRIT+FHRGGGSKRLQR+ID KR+TSS+GIVER+EYDPNRSSWIA VRWIEGV    K+
Sbjct:    9 KALKQLTFHLKRNSAGRNSSGRITVFHRGGGSKRLQRKIDFKRSTSSMGIVERIEYDPNRSSWIALVRWIEGVLRPGKR 87          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RICM5 (50S ribosomal protein L2 OS=Rickettsia massiliae (strain Mtu5) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.165e-13
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 3
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            R L+  T G  K+ GRN+ GRIT +HRGGG K+L R ID KR    I  IVER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG 99          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RICFE (50S ribosomal protein L2 OS=Rickettsia felis GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.165e-13
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 3
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            R L+  T G  K+ GRN+ GRIT +HRGGG K+L R ID KR    I  IVER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG 99          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RICCN (50S ribosomal protein L2 OS=Rickettsia conorii GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.165e-13
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 3
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            R L+  T G  K+ GRN+ GRIT +HRGGG K+L R ID KR    I  IVER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG 99          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RICAE (50S ribosomal protein L2 OS=Rickettsia africae (strain ESF-5) GN=rplB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.165e-13
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 3
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            R L+  T G  K+ GRN+ GRIT +HRGGG K+L R ID KR    I  IVER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGISKTGGRNNQGRITSWHRGGGHKKLYRIIDFKRNKIDISAIVERIEYDPNRTAFIALIKYEDG 99          
BLAST of EY692468 vs. ExPASy Swiss-Prot
Match: RL2_RICTY (50S ribosomal protein L2 OS=Rickettsia typhi GN=rplB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.828e-13
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  252 RALRQFTLGKGKSAGRNSSGRITIFHRGGGSKRLQRRIDLKRTTSSI-GIVERVEYDPNRSSWIAPVRWIEG 464
            R L+  T G  K+ GRN  GRIT +HRGGG K+L R ID KR    I  +VER+EYDPNR+++IA +++ +G
Sbjct:   28 RPLKSLTKGMSKTGGRNQQGRITSWHRGGGHKKLYRVIDFKRKKIDIFAVVERIEYDPNRTAFIALIKYDDG 99          
The following BLAST results are available for this feature:
BLAST of EY692468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RM02_ARATH4.323e-4677.3460S ribosomal protein L2, mitochondrial OS=Arabido... [more]
RM02_ORYSJ9.652e-3869.2360S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSI9.652e-3869.2360S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSA9.652e-3869.2360S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_MARPO4.969e-2674.6860S ribosomal protein L2, mitochondrial OS=Marchan... [more]
RL2_RICM52.165e-1352.7850S ribosomal protein L2 OS=Rickettsia massiliae (... [more]
RL2_RICFE2.165e-1352.7850S ribosomal protein L2 OS=Rickettsia felis GN=rp... [more]
RL2_RICCN2.165e-1352.7850S ribosomal protein L2 OS=Rickettsia conorii GN=... [more]
RL2_RICAE2.165e-1352.7850S ribosomal protein L2 OS=Rickettsia africae (st... [more]
RL2_RICTY2.828e-1351.3950S ribosomal protein L2 OS=Rickettsia typhi GN=rp... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-700-001-A01-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692468 ID=EY692468; Name=EY692468; organism=Citrus sinensis; type=EST; length=918bp
CTGCCCGAAGGCCGTGGTATTCGCAAGGGCGCGGCGGATGCCATCCGCAG
TCATATCGAAGCATTGGGTGGAAGTTTTCCAGCCGCCTTGCAGGCCAAGG
TCGACCCACGCGTCCGCAACCCTAGACACCCTTTTTTCACTCGGTCACCG
CCGAATCCGCGGCAGCCATTCAGAGTATCTCCGGAGTAGGGGCTAATTTG
TAAGGGAATCGAATGGGTACGAAACAGGCAATGACAAAATTTAAAGAGGT
GAGAGCACTGAGACAATTCACTTTGGGTAAAGGGAAGTCCGCTGGTAGGA
ACTCCTCGGGGCGTATTACGATTTTTCACCGGGGGGGTGGTTCGAAGCGA
TTGCAGCGAAGAATTGATCTGAAACGTACCACTTCCTCTATTGGTATTGT
TGAAAGGGTTGAATATGACCCTAATCGTTCCTCTTGGATCGCTCCTGTAC
GATGGATCGAAGGGGTTCAGATGCAGCAGAAGAAGTGCAACACCATAGAA
GAGTTTGATCCGCCGCCGCTACGTAAGTTCTTCGAACCTACCACCGCCGC
CATCAGCGGCAAATTTTCGTTCTCTTTCCTCTCCCAGAATGTGGATCAAA
GAAAAGTAGCTTCCTTCTCACCTGGACTGATGGCNGGCTGATGTAATGCA
TGGNTAGCATTCCCTAGTCGAAGAGCCCCTTACGACTACTAGTGATAGCA
AGGGTGCAGGAGGAAAAGGTAAATAACTTGCGCAAGGATGGCTTCTTTTC
TGCATCTCATCTCCATGGGCAGGGAAAGACTGCCTCCTTTTCTACCCTAG
GATGCAGTAGCTGGACGGAAACCACTTTCTCGCCCCTCNATGGAAAAAAA
AGCGAAGGAGTGATACTCACCTGACAAGAGGAAAAACCATATCCCTGGTG
AGATCAAAGGGAAACCAA
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