EY692441

Overview
NameEY692441
Unique NameEY692441
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY692441 vs. ExPASy Swiss-Prot
Match: TTC1_MOUSE (Tetratricopeptide repeat protein 1 OS=Mus musculus GN=Ttc1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.078e-26
Identity = 57/131 (43.51%), Postives = 87/131 (66.41%), Query Frame = 1
Query:  169 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRLEPLAXXXXXXXXXXXIGKLKEMGNSILGRFGMSTDNFKAVKDPNTGAYSISF 561
            RS+  SNR    +K  K E +I +C+KA++LNPTY++A++RRAE +EK +  +EA+ D K +LE DPS +QA+   +RL               +GKLK++GN +L  FG+ST+NF+  +D +TG+YSI+F
Sbjct:  154 RSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDPSVHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINF 284          
BLAST of EY692441 vs. ExPASy Swiss-Prot
Match: TTC1_HUMAN (Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 8.662e-26
Identity = 58/131 (44.27%), Postives = 87/131 (66.41%), Query Frame = 1
Query:  169 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRLEPLAXXXXXXXXXXXIGKLKEMGNSILGRFGMSTDNFKAVKDPNTGAYSISF 561
            RSI  SNR    +K  K E +I +C+KA++LNP+Y++A++RRAE +EK +  +EA+ D K ILE DPS +QA+   +RL               +GKLK++GN +L  FG+ST+NF+  +D +TG+YSI+F
Sbjct:  154 RSILFSNRAAARMKQDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSIHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINF 284          
BLAST of EY692441 vs. ExPASy Swiss-Prot
Match: TTC1_BOVIN (Tetratricopeptide repeat protein 1 OS=Bos taurus GN=TTC1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.478e-25
Identity = 57/131 (43.51%), Postives = 87/131 (66.41%), Query Frame = 1
Query:  169 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRLEPLAXXXXXXXXXXXIGKLKEMGNSILGRFGMSTDNFKAVKDPNTGAYSISF 561
            RS+  SNR    +K  K E +I +C+KA++LNP+Y++A++RRAE +EK +  +EA+ D K ILE DPS +QA+   +RL               +GKLK++GN +L  FG+ST+NF+  +D +TG+YSI+F
Sbjct:  154 RSVLFSNRAAARMKQEKKEMAISDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSVHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINF 284          
BLAST of EY692441 vs. ExPASy Swiss-Prot
Match: DNJC7_DICDI (DnaJ homolog subfamily C member 7 homolog OS=Dictyostelium discoideum GN=dnajc7 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.298e-12
Identity = 38/127 (29.92%), Postives = 64/127 (50.39%), Query Frame = 1
Query:  100 KEGQSASEKKEVAPALVPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRLEPLAXXXXXXXXXXXIGKLKEMGNS 480
            K  Q+A +    A ++ P++  + S  +SNR    + L +  E+I +CT A+ ++P Y KA IRRA+   K E++E+A+ D +K    DP N + +R I   +              +G  KE G +
Sbjct:  249 KNYQAAYDSFTEALSIDPKLETMNSQLYSNRAAALVHLNRISEAINDCTSAVTIDPNYGKAYIRRAQCQMKQENYEDAVRDYEKAQSLDPENGELQRNIKEAKIAHKKSLRKDYYKILGVSKEAGET 375          
BLAST of EY692441 vs. ExPASy Swiss-Prot
Match: TOM34_PONAB (Mitochondrial import receptor subunit TOM34 OS=Pongo abelii GN=TOMM34 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.071e-11
Identity = 29/77 (37.66%), Postives = 54/77 (70.13%), Query Frame = 1
Query:  160 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR 390
            + L S  +SNR +C+L L ++ E++K+CT+AL+L+   +KA  RRA+AH+ L+ ++ + AD+  +L+ +P N  A++
Sbjct:  223 SNLESATYSNRALCYLVLKQYTEAVKDCTEALKLDGKNVKAFYRRAQAHKALKDYKSSFADISNLLQIEPRNGPAQK 299          
BLAST of EY692441 vs. ExPASy Swiss-Prot
Match: TOM34_HUMAN (Mitochondrial import receptor subunit TOM34 OS=Homo sapiens GN=TOMM34 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 2.071e-11
Identity = 29/77 (37.66%), Postives = 54/77 (70.13%), Query Frame = 1
Query:  160 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR 390
            + L S  +SNR +C+L L ++ E++K+CT+AL+L+   +KA  RRA+AH+ L+ ++ + AD+  +L+ +P N  A++
Sbjct:  223 SNLESATYSNRALCYLVLKQYTEAVKDCTEALKLDGKNVKAFYRRAQAHKALKDYKSSFADISNLLQIEPRNGPAQK 299          
BLAST of EY692441 vs. ExPASy Swiss-Prot
Match: SPAG1_HUMAN (Sperm-associated antigen 1 OS=Homo sapiens GN=SPAG1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 6.027e-11
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 1
Query:  154 EMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRL 405
            E+A+  SI +SNR  C+LK G     I++C +ALEL+P  MK L+RRA A+E LE + +A  D K +L+ D     A  ++ RL
Sbjct:  481 EIADDLSILYSNRAACYLKEGNCSGCIQDCNRALELHPFSMKPLLRRAMAYETLEQYGKAYVDYKTVLQIDCGLQLANDSVNRL 564          
The following BLAST results are available for this feature:
BLAST of EY692441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TTC1_MOUSE5.078e-2643.51Tetratricopeptide repeat protein 1 OS=Mus musculus... [more]
TTC1_HUMAN8.662e-2644.27Tetratricopeptide repeat protein 1 OS=Homo sapiens... [more]
TTC1_BOVIN1.478e-2543.51Tetratricopeptide repeat protein 1 OS=Bos taurus G... [more]
DNJC7_DICDI9.298e-1229.92DnaJ homolog subfamily C member 7 homolog OS=Dicty... [more]
TOM34_PONAB2.071e-1137.66Mitochondrial import receptor subunit TOM34 OS=Pon... [more]
TOM34_HUMAN2.071e-1137.66Mitochondrial import receptor subunit TOM34 OS=Hom... [more]
SPAG1_HUMAN6.027e-1142.86Sperm-associated antigen 1 OS=Homo sapiens GN=SPAG... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-071-F02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY692441 ID=EY692441; Name=EY692441; organism=Citrus sinensis; type=EST; length=934bp
CGTCCGGGTACGGGTCGGGATTCCCGGGTCGACCCCGCGTCCGCTTTGCG
AGTGGCATCGGTGCCGGAGAGAGCGGAATCAGCTTCGGCGCCGGAGGCGA
AGGAAGGGCAGTCGGCATCGGAGAAGAAGGAAGTGGCGCCGGCGCTGGTG
CCGGAAATGGCAGAGCTGCGTTCCATATGCCATTCGAATCGTGGAATATG
CTTTTTGAAGCTTGGAAAATTCGAGGAGTCTATCAAGGAATGCACAAAGG
CGTTGGAGCTTAATCCTACATATATGAAAGCTCTGATCAGAAGAGCAGAG
GCGCATGAAAAGCTTGAACACTTTGAAGAGGCTATTGCTGATATGAAGAA
AATCTTGGAATTTGATCCTTCAAATAATCAAGCCAAGAGAACCATTCTTC
GTTTGGAACCACTGGCAGAAGAAAAACGTGAAAAGATGAAGGAAGAGATG
ATTGGAAAGCTAAAAGAAATGGGTAACTCTATCCTGGGCCGTTTTGGGAT
GAGCACTGACAACTTCAAAGCTGTTAAAGATCCGAACACTGGCGCCTACT
CAATATCATTCCAGAAATAGGTTGGTTCAATATAACTTTAATTTTTTATT
GGAACATAGTGTGAGAAGACTGCACTCAGGCCATATAGTGAAACAGGAAT
CCTCCCCTGGGCATCCCACTGTAAAGGTGATTTAAGTCTTAACAGCTGAA
GCAGACATTTTAAATGTCGTGGAAAAGTTTTGAAATGAAGGCAGTTCCCT
AAGTTTGGTTGGGTGTTTTGGAAATTAAAAAGTACAGAAAGTGGATCTCG
CCAAGTGTTAGAAGACAAATATAACACGGCCTAAAAACGACCCCTTTTAA
ACAGAGAAACACATTACAAAAGGGCAACCATAGCCTAAAAAATGAAAGTG
ACCGGAAGAGGTAGCAAACAAGAAGAACCAAAGA
back to top